RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 GPRC5CQ9NQ84 441 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 XPNPEP1Q9NQW7 623 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 TBX20Q9UMR3 447 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 TRAF3IP3Q9Y228 551 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 AKT3Q9Y243 479 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 FRMD4BQ9Y2L6 1034 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 EVPLQ92817 2033 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 SCN10AQ9Y5Y9 1956 aa7.06□□□□□ -1.28
SPG11-221ENST00000560299 RANBP2P49792 3224 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 DENND3A2RUS2 1198 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 TRIM49BA6NDI0 452 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 ZBTB42B2RXF5 422 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 KCNJ18B7U540 433 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 M0QZ92 97 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 KIAA0355O15063 1070 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 KIAA0391O15091 583 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 CAND2O75155 1236 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 PARNO95453 639 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 ASGR1P07306 291 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 SRGAP2CP0DJJ0 459 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 CYP2C9P11712 490 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 HOXB3P14651 431 aaPredicted RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 GLRA2P23416 452 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 PHKA2P46019 1235 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 MTIF2P46199 727 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 CLCN3P51790 818 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 CASP5P51878 434 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 FANCCQ00597 558 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 NCBP1Q09161 790 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 CCDC173Q0VFZ6 552 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 LAMTOR4Q0VGL1 99 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 KCNJ12Q14500 433 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 KCNA10Q16322 511 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 NFIL3Q16649 462 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 MAPK6Q16659 721 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 CCDC40Q4G0X9 1142 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 ZC2HC1CQ53FD0 456 aaPredicted RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 TCP11X2Q5H9J9 407 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 SLFN12LQ6IEE8 588 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 TAF2Q6P1X5 1199 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 CXCL17Q6UXB2 119 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 SLC39A5Q6ZMH5 540 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 FILIP1Q7Z7B0 1213 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 USP37Q86T82 979 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 RPAINQ86UA6 219 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 NME8Q8N427 588 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 LRRC71Q8N4P6 559 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 RNF149Q8NC42 400 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 TMEM161BQ8NDZ6 487 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 TRAPPC12Q8WVT3 735 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 PRPF31Q8WWY3 499 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 KAT2BQ92831 832 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 KCNN1Q92952 543 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 LENG1Q96BZ8 264 aaPredicted RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 SCLT1Q96NL6 688 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 FIZ1Q96SL8 496 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 STRA6Q9BX79 667 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 INO80BQ9C086 356 aaPredicted RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 KCTD10Q9H3F6 313 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 METTL14Q9HCE5 456 aaKnown RBP7.05□□□□□ -1.28
SPG11-221ENST00000560299 SETD4Q9NVD3 440 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 ARHGAP28Q9P2N2 729 aa7.05□□□□□ -1.28
SPG11-221ENST00000560299 A0A0U1RQG5 324 aaPredicted RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 SMIM35A0A1B0GVV1 85 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 A0A1W2PQ45 241 aaPredicted RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 A0A1W2PQY0 241 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 MBLAC1A4D2B0 266 aaPredicted RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 LRRC10BA6NIK2 292 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 ARVCFO00192 962 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 PES1O00541 588 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 HNRNPDLO14979 420 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 PPP1R37O75864 691 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 ADCY5O95622 1261 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 CD4P01730 458 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 NR3C1P04150 777 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 EPB41P11171 864 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 ZNF18P17022 549 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 NR2F2P24468 414 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 LIG4P49917 911 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 PMS1P54277 932 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 PPP2R3AQ06190 1150 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 CAPSQ13938 189 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 PCBP1Q15365 356 aaKnown RBP eCLIP7.04□□□□□ -1.28
SPG11-221ENST00000560299 TMEM132AQ24JP5 1023 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 NBPF20Q3BBV1 942 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 ZCWPW2Q504Y3 356 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 FAM47CQ5HY64 1035 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 CDKAL1Q5VV42 579 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 ARMCX5Q6P1M9 558 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 APBB1IPQ7Z5R6 666 aaPredicted RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 SRGAP1Q7Z6B7 1085 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 ZNF410Q86VK4 478 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 SLC9A9Q8IVB4 645 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 MAP4K3Q8IVH8 894 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 C12orf56Q8IXR9 622 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 DRC7Q8IY82 874 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 GLIS3Q8NEA6 775 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 ASAP3Q8TDY4 903 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 LMBR1Q8WVP7 490 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms