RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RNPC3Q96LT9 517 aaKnown RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 ADAM2Q99965 735 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 TSPYL2Q9H2G4 693 aaPredicted RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 TMEM134Q9H6X4 195 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 OLFML3Q9NRN5 406 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 PRMT7Q9NVM4 692 aaPredicted RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 SEL1LQ9UBV2 794 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 COLQQ9Y215 455 aaPredicted RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 CNTNAP2Q9UHC6 1331 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 ENPP3O14638 875 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 PPP1R37O75864 691 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 ERLIN2O94905 339 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 PNOCQ13519 176 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 POSTNQ15063 836 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 MAPK6Q16659 721 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 ZC2HC1CQ53FD0 456 aaPredicted RBP23.98■■□□□ 1.43
SNX1-210ENST00000560260 NT5DC1Q5TFE4 455 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 TMCO2Q7Z6W1 182 aaPredicted RBP23.98■■□□□ 1.43
SNX1-210ENST00000560260 ERCC4Q92889 916 aaPredicted RBP23.98■■□□□ 1.43
SNX1-210ENST00000560260 STRA6Q9BX79 667 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 FTHL17Q9BXU8 183 aa23.98■■□□□ 1.43
SNX1-210ENST00000560260 ACKR2O00590 384 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 KINO60870 393 aaKnown RBP23.97■■□□□ 1.43
SNX1-210ENST00000560260 MYBP10242 640 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 SMTNP53814 917 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 UBXN11Q5T124 520 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 FAM109BQ6ICB4 259 aaPredicted RBP23.97■■□□□ 1.43
SNX1-210ENST00000560260 CDR2LQ86X02 465 aaPredicted RBP23.97■■□□□ 1.43
SNX1-210ENST00000560260 TDHQ8IZJ6 230 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 GPT2Q8TD30 523 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 PRIMPOLQ96LW4 560 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 ST6GALNAC4Q9H4F1 302 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 RGS18Q9NS28 235 aa23.97■■□□□ 1.43
SNX1-210ENST00000560260 LAMA3Q16787 3333 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 PVALEFA0A1B0GWK0 134 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 C9IYK1 514 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 K7ERI5 159 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 MYL1P05976 194 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 PCBP1Q15365 356 aaKnown RBP eCLIP23.96■■□□□ 1.43
SNX1-210ENST00000560260 KMT5BQ4FZB7 885 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 ZNF720Q7Z2F6 126 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 MRPL44Q9H9J2 332 aaKnown RBP23.96■■□□□ 1.43
SNX1-210ENST00000560260 COL4A6Q14031 1691 aa23.96■■□□□ 1.43
SNX1-210ENST00000560260 EFCAB14O75071 495 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 RPN1P04843 607 aaKnown RBP23.95■■□□□ 1.42
SNX1-210ENST00000560260 MCM4P33991 863 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 GTF2BQ00403 316 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 PRPF4BQ13523 1007 aaKnown RBP23.95■■□□□ 1.42
SNX1-210ENST00000560260 FAM26FQ5R3K3 315 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 EEF1DP3Q658K8 133 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 KANK3Q6NY19 840 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 IKZF4Q9H2S9 585 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 PDZD7Q9H5P4 517 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 CHST12Q9NRB3 414 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 TTC3P53804 2025 aa23.95■■□□□ 1.42
SNX1-210ENST00000560260 GOLGA6L22H0YM25 854 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 KCNA1Q09470 495 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 MAP4K3Q8IVH8 894 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 MYOCDQ8IZQ8 938 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 CRIPAKQ8N1N5 446 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 TARS2Q9BW92 718 aaKnown RBP23.94■■□□□ 1.42
SNX1-210ENST00000560260 EIF2AQ9BY44 585 aaKnown RBP23.94■■□□□ 1.42
SNX1-210ENST00000560260 KCNG1Q9UIX4 513 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 TBX20Q9UMR3 447 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 SLC4A7Q9Y6M7 1214 aa23.94■■□□□ 1.42
SNX1-210ENST00000560260 A0A1B0GUA9 196 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 H0YCG3 227 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 ABLIM1O14639 778 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 GCNT3O95395 438 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 ZSCAN20P17040 1043 aaPredicted RBP23.93■■□□□ 1.42
SNX1-210ENST00000560260 ATF7P17544 494 aaPredicted RBP23.93■■□□□ 1.42
SNX1-210ENST00000560260 AXLP30530 894 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 KCNJ6P48051 423 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 TWF2Q6IBS0 349 aaKnown RBP23.93■■□□□ 1.42
SNX1-210ENST00000560260 ELOA2Q8IYF1 753 aaPredicted RBP23.93■■□□□ 1.42
SNX1-210ENST00000560260 KIAA0895Q8NCT3 520 aa23.93■■□□□ 1.42
SNX1-210ENST00000560260 ACO2Q99798 780 aaKnown RBP23.93■■□□□ 1.42
SNX1-210ENST00000560260 MTIF3Q9H2K0 278 aaKnown RBP23.93■■□□□ 1.42
SNX1-210ENST00000560260 GRXCR1A8MXD5 290 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 PRPF6O94906 941 aaKnown RBP23.92■■□□□ 1.42
SNX1-210ENST00000560260 AMHP03971 560 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 IBSPP21815 317 aaPredicted RBP23.92■■□□□ 1.42
SNX1-210ENST00000560260 SARSP49591 514 aaKnown RBP23.92■■□□□ 1.42
SNX1-210ENST00000560260 FAM189BP81408 668 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 ATF7IP2Q5U623 682 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 NOTUMQ6P988 496 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 EPM2AIP1Q7L775 607 aaPredicted RBP23.92■■□□□ 1.42
SNX1-210ENST00000560260 ECHDC2Q86YB7 292 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 CCDC51Q96ER9 411 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 TRAIPQ9BWF2 469 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 MRPL4Q9BYD3 311 aaKnown RBP23.92■■□□□ 1.42
SNX1-210ENST00000560260 PTPRHQ9HD43 1115 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 SLC39A2Q9NP94 309 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 C1orf112Q9NSG2 853 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 EXOC1Q9NV70 894 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 GBF1Q92538 1859 aa23.92■■□□□ 1.42
SNX1-210ENST00000560260 ZMYM2Q9UBW7 1377 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 TISP43B9A030 160 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 STRN3Q13033 797 aa23.91■■□□□ 1.42
SNX1-210ENST00000560260 STK4Q13043 487 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms