RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PLA2G4FQ68DD2 849 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 PHLDB2Q86SQ0 1253 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 SAAL1Q96ER3 474 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 FMO2Q99518 471 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 MXRA8Q9BRK3 442 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 TOPORSQ9NS56 1045 aaPredicted RBP13.93□□□□□ -0.18
LDLR-207ENST00000558013 ZNF70Q9UC06 446 aaPredicted RBP13.93□□□□□ -0.18
LDLR-207ENST00000558013 PTPN22Q9Y2R2 807 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 STK24Q9Y6E0 443 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 CAPN7Q9Y6W3 813 aa13.93□□□□□ -0.18
LDLR-207ENST00000558013 TLDC2A0PJX2 215 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 KCNJ1P48048 391 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 KIF22Q14807 665 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 EPC2Q52LR7 807 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 NOP9Q86U38 636 aaKnown RBP13.92□□□□□ -0.18
LDLR-207ENST00000558013 CBWD2Q8IUF1 395 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 C7orf43Q8WVR3 580 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 SEC14L1Q92503 715 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 SEMA4DQ92854 862 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 ZDHHC18Q9NUE0 388 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 ODF2LQ9ULJ1 636 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 ATP9AO75110 1047 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 ADRB2P07550 413 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 CHRNB2P17787 502 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 COMTP21964 271 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 ANXA13P27216 316 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 PEX3P56589 373 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 PPP2R5AQ15172 486 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 LRIG3Q6UXM1 1119 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 JAMLQ86YT9 394 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 PPM1KQ8N3J5 372 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 PRELID2Q8N945 189 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 ERP44Q9BS26 406 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 VCPKMTQ9H867 229 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 HSPBP1Q9NZL4 362 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 SEL1LQ9UBV2 794 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 CCPG1Q9ULG6 757 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 USP20Q9Y2K6 914 aa13.92□□□□□ -0.18
LDLR-207ENST00000558013 MRPL11Q9Y3B7 192 aaKnown RBP13.92□□□□□ -0.18
LDLR-207ENST00000558013 CNTNAP1P78357 1384 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 PHF20L1A8MW92 1017 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 ANKRD63C9JTQ0 380 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 PYGMP11217 842 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 RARRES1P49788 294 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 MRPS9P82933 396 aaKnown RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 NFIL3Q16649 462 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 C2CD6Q53TS8 623 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 DUPD1Q68J44 220 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 DHX38Q92620 1227 aaKnown RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 KREMEN1Q96MU8 473 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 TMEM117Q9H0C3 514 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 PNMA2Q9UL42 364 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 DAAM1Q9Y4D1 1078 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 TELO2Q9Y4R8 837 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 ZNF536O15090 1300 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 MEFVO15553 781 aaPredicted RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 MMEP08473 750 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 EIF2AK2P19525 551 aaKnown RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 FKBP1AP62942 108 aaKnown RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 IFFO1Q0D2I5 559 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 ZDHHC24Q6UX98 284 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 OTUD6BQ8N6M0 293 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 CHURC1Q8WUH1 139 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 RNF25Q96BH1 459 aaPredicted RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 CYFIP2Q96F07 1278 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 CARD9Q9H257 536 aa13.91□□□□□ -0.18
LDLR-207ENST00000558013 HERC5Q9UII4 1024 aaKnown RBP13.91□□□□□ -0.18
LDLR-207ENST00000558013 SORBS3O60504 671 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 FAM107AO95990 144 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 SLCO1A2P46721 670 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 KCNV1Q6PIU1 500 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 HAUS6Q7Z4H7 955 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 SEMA4AQ9H3S1 761 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 KIAA0391O15091 583 aaKnown RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 ALAS1P13196 640 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 ADSSP30520 456 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 RPL21P46778 160 aaKnown RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 NBPF9Q3BBW0 867 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 DAB2IPQ5VWQ8 1189 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 LLGL2Q6P1M3 1020 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 STXBP4Q6ZWJ1 553 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 RAPGEF5Q92565 580 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 TTC7AQ9ULT0 858 aaPredicted RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 PPP2R2AP63151 447 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 IFI35P80217 286 aaPredicted RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 DLGAP5Q15398 846 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 B4GALNT4Q76KP1 1039 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 EIF1ADQ8N9N8 165 aaKnown RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 EPS8L1Q8TE68 723 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.9□□□□□ -0.18
LDLR-207ENST00000558013 TXLNGYQ9BZA5 131 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 TRIM7Q9C029 511 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 PDGFDQ9GZP0 370 aaPredicted RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 RAVER2Q9HCJ3 691 aaKnown RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 ZNF277Q9NRM2 450 aaPredicted RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 TMOD2Q9NZR1 351 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 LARSQ9P2J5 1176 aaKnown RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 DDX20Q9UHI6 824 aaKnown RBP13.9□□□□□ -0.18
LDLR-207ENST00000558013 KIF13BQ9NQT8 1826 aa13.9□□□□□ -0.18
LDLR-207ENST00000558013 ATP2C2O75185 946 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms