RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TLDC2A0PJX2 215 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 PMM2O15305 246 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 NMT1P30419 496 aaKnown RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 ZNF211Q13398 564 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 PPP1R7Q15435 360 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CBWD6Q4V339 395 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CBWD3Q5JTY5 395 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CBWD5Q5RIA9 395 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CDC42EP5Q6NZY7 148 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CCDC137Q6PK04 289 aaKnown RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 INTS8Q75QN2 995 aaKnown RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 C18orf8Q96DM3 657 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 SERPINB12Q96P63 405 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 NACC1Q96RE7 527 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 UIMC1Q96RL1 719 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 PLVAPQ9BX97 442 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 SEPT11Q9NVA2 429 aaKnown RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 TAF1LQ8IZX4 1826 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 BACH1O14867 736 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 PEX5P50542 639 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 LMNB2Q03252 620 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 CNGA2Q16280 664 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 SYDE2Q5VT97 1194 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 HIBCHQ6NVY1 386 aaPredicted RBP17.52■□□□□ 0.4
SHMT2-231ENST00000557433 SYDE1Q6ZW31 735 aaPredicted RBP17.52■□□□□ 0.4
SHMT2-231ENST00000557433 SP8Q8IXZ3 490 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 LMO3Q8TAP4 145 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 TEKT1Q969V4 418 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 HOOK2Q96ED9 719 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 FIZ1Q96SL8 496 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 P2RX7Q99572 595 aaKnown RBP17.52■□□□□ 0.4
SHMT2-231ENST00000557433 SEMA4AQ9H3S1 761 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 NOD2Q9HC29 1040 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 WHRNQ9P202 907 aa17.52■□□□□ 0.4
SHMT2-231ENST00000557433 O00370 1275 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 EML1O00423 815 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 FTLP02792 175 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 VIMP08670 466 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MAPTP10636 758 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 COILP38432 576 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 CALCOCO2Q13137 446 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 AUHQ13825 339 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 CRYMQ14894 314 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 CERKLQ49MI3 558 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 TMEM179Q6ZVK1 233 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 OTOP1Q7RTM1 612 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 LRRC4CQ9HCJ2 640 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 SPATA31A6Q5VVP1 1343 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 IGLV3-22A0A075B6J6 115 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 FOXN3O00409 490 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MAPK13O15264 365 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 SNX3O60493 162 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 NPM3O75607 178 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 SLITRK3O94933 977 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 OAS1P00973 400 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MAN1A1P33908 653 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 IFI35P80217 286 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MKRN3Q13064 507 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 ZNF268Q14587 947 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 FAM98CQ17RN3 349 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 PHLDB3Q6NSJ2 640 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 SLC13A5Q86YT5 568 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 C12orf56Q8IXR9 622 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MAIP1Q8WWC4 291 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 N4BP2L2Q92802 583 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 SLC5A5Q92911 643 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 CD101Q93033 1021 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 PRMT1Q99873 361 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 ELAC2Q9BQ52 826 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MRIQ9BWK5 157 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 STRA6Q9BX79 667 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 MOV10L1Q9BXT6 1211 aaKnown RBP17.51■□□□□ 0.39
SHMT2-231ENST00000557433 LRRC19Q9H756 370 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 TAS2R14Q9NYV8 317 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 RGL1Q9NZL6 768 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 TMOD4Q9NZQ9 345 aa17.51■□□□□ 0.39
SHMT2-231ENST00000557433 EXOC3O60645 756 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 ATP2C2O75185 946 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 PSMD10O75832 226 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 SUN1O94901 812 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 PRELPP51888 382 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 SLC8A3P57103 927 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 SNRPFP62306 86 aaKnown RBP17.5■□□□□ 0.39
SHMT2-231ENST00000557433 ARHGAP44Q17R89 818 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 ZNF568Q3ZCX4 644 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 ADAT2Q7Z6V5 191 aaKnown RBP17.5■□□□□ 0.39
SHMT2-231ENST00000557433 AMIGO3Q86WK7 504 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 WDR11Q9BZH6 1224 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 TMEM206Q9H813 350 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 EHMT1Q9H9B1 1298 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 PI4KBQ9UBF8 816 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 USP15Q9Y4E8 981 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-231ENST00000557433 LY75O60449 1722 aa17.5■□□□□ 0.39
SHMT2-231ENST00000557433 ECEL1O95672 775 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 CYP2J2P51589 502 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 CAV1Q03135 178 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 ICA1Q05084 483 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 VPS72Q15906 364 aa17.49■□□□□ 0.39
SHMT2-231ENST00000557433 ZC2HC1CQ53FD0 456 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-231ENST00000557433 LRCH2Q5VUJ6 765 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms