RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 FZD8Q9H461 694 aa14.99□□□□□ -0.01
SHMT2-228ENST00000557302 CUEDC2Q9H467 287 aa14.99□□□□□ -0.01
SHMT2-228ENST00000557302 RC3H2Q9HBD1 1191 aaKnown RBP14.99□□□□□ -0.01
SHMT2-228ENST00000557302 FAM105AQ9NUU6 356 aa14.99□□□□□ -0.01
SHMT2-228ENST00000557302 LARSQ9P2J5 1176 aaKnown RBP14.99□□□□□ -0.01
SHMT2-228ENST00000557302 RBM19Q9Y4C8 960 aaKnown RBP14.99□□□□□ -0.01
SHMT2-228ENST00000557302 PHLPP2Q6ZVD8 1323 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 LINC01553A4QN01 128 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 B4GALT5O43286 388 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 HOXA2O43364 376 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 ARHGEF15O94989 841 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 EOMESO95936 686 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 ARF4P18085 180 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-228ENST00000557302 PRPF4BQ13523 1007 aaKnown RBP14.98□□□□□ -0.01
SHMT2-228ENST00000557302 GIT2Q14161 759 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 BTG3Q14201 252 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-228ENST00000557302 E2F4Q16254 413 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 TMEM132AQ24JP5 1023 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 ZNF689Q96CS4 500 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-228ENST00000557302 CPB2Q96IY4 423 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 PYM1Q9BRP8 204 aaKnown RBP14.98□□□□□ -0.01
SHMT2-228ENST00000557302 PARVGQ9HBI0 331 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 ARHGAP28Q9P2N2 729 aa14.98□□□□□ -0.01
SHMT2-228ENST00000557302 GBF1Q92538 1859 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 CNTNAP2Q9UHC6 1331 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 K7ERI5 159 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 ACKR2O00590 384 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 SLC16A4O15374 487 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 POLR2DO15514 142 aaKnown RBP14.97□□□□□ -0.01
SHMT2-228ENST00000557302 ZNF623O75123 536 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 CMA1P23946 247 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 GATMP50440 423 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 ZNF131P52739 623 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 DYMQ7RTS9 669 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 ZNF598Q86UK7 904 aaKnown RBP14.97□□□□□ -0.01
SHMT2-228ENST00000557302 CMTR2Q8IYT2 770 aaKnown RBP14.97□□□□□ -0.01
SHMT2-228ENST00000557302 ABI1Q8IZP0 508 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 FIBCD1Q8N539 461 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 MYCT1Q8N699 235 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 DDX12PQ92771 950 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 TGS1Q96RS0 853 aaKnown RBP14.97□□□□□ -0.01
SHMT2-228ENST00000557302 NTPCRQ9BSD7 190 aaKnown RBP14.97□□□□□ -0.01
SHMT2-228ENST00000557302 LRRC27Q9C0I9 530 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 ZHX3Q9H4I2 956 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 TMEM134Q9H6X4 195 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 GDPD2Q9HCC8 539 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 CHMP5Q9NZZ3 219 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 KCNH3Q9ULD8 1083 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 PCDHB2Q9Y5E7 798 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 CHD7Q9P2D1 2997 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 COL4A6Q14031 1691 aa14.97□□□□□ -0.01
SHMT2-228ENST00000557302 A0A1B0GUA9 196 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 MYMKA6NI61 221 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 TBKBP1A7MCY6 615 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 H0YCG3 227 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 N4BP3O15049 544 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 FGFR1P11362 822 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 ATF7P17544 494 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-228ENST00000557302 GRIN2CQ14957 1233 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 PAN2Q504Q3 1202 aaKnown RBP14.96□□□□□ -0.01
SHMT2-228ENST00000557302 UBXN11Q5T124 520 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 SLC27A1Q6PCB7 646 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 TMEM161BQ8NDZ6 487 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 PGBD4Q96DM1 585 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 TRIM6Q9C030 488 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-228ENST00000557302 TMEM117Q9H0C3 514 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 TNMDQ9H2S6 317 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 CERS4Q9HA82 394 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 MAGEF1Q9HAY2 307 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 MTMR10Q9NXD2 777 aa14.96□□□□□ -0.01
SHMT2-228ENST00000557302 A0A1B0GVL5 298 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 A0A1W2PQ27 194 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 A0A1W2PQ64 194 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 A0A1W2PQD8 194 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 TTLL13PA6NNM8 815 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 MAPTP10636 758 aaKnown RBP14.95□□□□□ -0.02
SHMT2-228ENST00000557302 PFKFB1P16118 471 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 SCP2P22307 547 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 NCKAP1LP55160 1127 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 ERVK-21P61565 698 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 AMPD3Q01432 767 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 STRN3Q13033 797 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 TPRNQ4KMQ1 711 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 MRPL10Q7Z7H8 261 aaKnown RBP14.95□□□□□ -0.02
SHMT2-228ENST00000557302 CDR2LQ86X02 465 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-228ENST00000557302 HACE1Q8IYU2 909 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 CNNM3Q8NE01 707 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 ARNTL2Q8WYA1 636 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 LPPQ93052 612 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 DNAJC19Q96DA6 116 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 SAMD11Q96NU1 681 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 EIF2AQ9BY44 585 aaKnown RBP14.95□□□□□ -0.02
SHMT2-228ENST00000557302 MRPL4Q9BYD3 311 aaKnown RBP14.95□□□□□ -0.02
SHMT2-228ENST00000557302 PRDM12Q9H4Q4 367 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 PDZD7Q9H5P4 517 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 RNF19AQ9NV58 838 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 KBTBD4Q9NVX7 518 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 MTUS1Q9ULD2 1270 aa14.95□□□□□ -0.02
SHMT2-228ENST00000557302 K7ENM7 598 aa14.94□□□□□ -0.02
SHMT2-228ENST00000557302 TRAK2O60296 914 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms