RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 KIF4AO95239 1232 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 MMEP08473 750 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 SLCO1A2P46721 670 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 HIRAP54198 1017 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 PRKCEQ02156 737 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 LY6KQ17RY6 165 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 ASTE1Q2TB18 679 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 FIGNQ5HY92 759 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 HP1BP3Q5SSJ5 553 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CEP85LQ5SZL2 805 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 LEKR1Q6ZMV7 388 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CAPN12Q6ZSI9 719 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 MSANTD4Q8NCY6 345 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 KRT35Q92764 455 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 SCLT1Q96NL6 688 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 POLR3FQ9H1D9 316 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 ACBD3Q9H3P7 528 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 STIM2Q9P246 746 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CD2APQ9Y5K6 639 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CDK5RAP2Q96SN8 1893 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 SSU72P8A0A1W2PR75 194 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 GOLGA6CA6NDK9 693 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CTNND1O60716 968 aaKnown RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 KRT19P08727 400 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 GOLGA6DP0CG33 693 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 FERP16591 822 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 PLTPP55058 493 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 PSMC5P62195 406 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 IRX3P78415 501 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 SP2Q02086 613 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 TRAF1Q13077 416 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 PPP2R5CQ13362 524 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 SNRNP35Q16560 246 aaKnown RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 MOXD1Q6UVY6 613 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 EPM2AIP1Q7L775 607 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 PRUNE1Q86TP1 453 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CCDC50Q8IVM0 306 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 C10orf67Q8IYJ2 551 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 CASKIN2Q8WXE0 1202 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 ZNF653Q96CK0 615 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 NLRP4Q96MN2 994 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 TMEM117Q9H0C3 514 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 GOLGA6AQ9NYA3 693 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 RNF181Q9P0P0 153 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 APEX2Q9UBZ4 518 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 HPCAL4Q9UM19 191 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 NOC2LQ9Y3T9 749 aaKnown RBP6.05□□□□□ -1.44
LIMA1-215ENST00000552823 PCDHA10Q9Y5I2 948 aa6.05□□□□□ -1.44
LIMA1-215ENST00000552823 ANKRD31Q8N7Z5 1873 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ZMYM2Q9UBW7 1377 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 COL4A5P29400 1685 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 RREB1Q92766 1687 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 THSD7AQ9UPZ6 1657 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 F8VZ95 297 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 SART1O43290 800 aaKnown RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 HSF2BPO75031 334 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 PLS3P13797 630 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 FLT3P36888 993 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ACTR2P61160 394 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 PDCLQ13371 301 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ZSCAN26Q16670 478 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 DCAF15Q66K64 600 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 KAZNQ674X7 775 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 FAM83AQ86UY5 434 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 TPCN2Q8NHX9 752 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 AFAP1L1Q8TED9 768 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 HAUS1Q96CS2 278 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 FIZ1Q96SL8 496 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ATP8A1Q9Y2Q0 1164 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ADGRA3Q8IWK6 1321 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 FRMD3A2A2Y4 597 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 TTLL13PA6NNM8 815 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 PIK3CDO00329 1044 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 CCND2P30279 289 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 FKBP1AP62942 108 aaKnown RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 SETQ01105 290 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 B4GALNT4Q76KP1 1039 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 TAX1BP1Q86VP1 789 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 SCYL3Q8IZE3 742 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 DEPTORQ8TB45 409 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 NSUN6Q8TEA1 469 aaKnown RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 C1orf54Q8WWF1 131 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 IFT74Q96LB3 600 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 PCDHB18PQ96TA0 734 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 RIT2Q99578 217 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 AGPAT1Q99943 283 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 C11orf70Q9BRQ4 267 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 JPH1Q9HDC5 661 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 AIPL1Q9NZN9 384 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 NXF1Q9UBU9 619 aaKnown RBP6.04□□□□□ -1.44
LIMA1-215ENST00000552823 SLC9A2Q9UBY0 812 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 RAB21Q9UL25 225 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 LAMB1P07942 1786 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 COL24A1Q17RW2 1714 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 ATRNL1Q5VV63 1379 aa6.04□□□□□ -1.44
LIMA1-215ENST00000552823 TCRBV7S2A1N4TA0A589 114 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 ANO9A1A5B4 782 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 PI4K2BG5E9Z4 385 aa6.03□□□□□ -1.44
LIMA1-215ENST00000552823 MAP2K7O14733 419 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms