RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 TULP2O00295 520 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 PES1O00541 588 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ADAMTS3O15072 1205 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 CYTH3O43739 400 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 COBLO75128 1261 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 TACC1O75410 805 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 LCA5LO95447 670 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 RHOXF2BP0C7M4 288 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 SLURP2P0DP57 97 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 PLCG1P19174 1290 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 TRIM21P19474 475 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 CDC25AP30304 524 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ACTN2P35609 894 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 VAV2P52735 878 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 PMS1P54277 932 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 NAPAP54920 295 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 HERVK_113P62684 666 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 VSNL1P62760 191 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ASIC1P78348 528 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ST5P78524 1137 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 PTPN11Q06124 597 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 GRAPQ13588 217 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 RAB33AQ14088 237 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 SEPT2Q15019 361 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 TMEM266Q2M3C6 531 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 VWA3BQ502W6 1294 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 WIPI1Q5MNZ9 446 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ANKRD40Q6AI12 368 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 CENPPQ6IPU0 288 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 WDR59Q6PJI9 974 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 LEKR1Q6ZMV7 388 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 C8orf86Q6ZUL3 223 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 UNC13DQ70J99 1090 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ZNF572Q7Z3I7 529 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 HEATR3Q7Z4Q2 680 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ZNF804AQ7Z570 1209 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 DTWD1Q8N5C7 304 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 TRIM58Q8NG06 486 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 GRAPLQ8TC17 118 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 SH3RF3Q8TEJ3 882 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ATRIPQ8WXE1 791 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 ELMO3Q96BJ8 720 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 KLHDC7BQ96G42 594 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 CCDC42Q96M95 316 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 NAP1L4Q99733 375 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 RHOXF2Q9BQY4 288 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 CCDC86Q9H6F5 360 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 EHMT1Q9H9B1 1298 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 NHEJ1Q9H9Q4 299 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 RNF14Q9UBS8 474 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 SEC63Q9UGP8 760 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 MAPK8IP1Q9UQF2 711 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 LAMB1P07942 1786 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 SCN7AQ01118 1682 aa6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 COL16A1Q07092 1604 aaPredicted RBP6.61□□□□□ -1.35
CHMP4A-210ENST00000552620 CCDC88AQ3V6T2 1871 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 MAST2Q6P0Q8 1798 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 FLT1P17948 1338 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 GPR75-ASB3A0A0A6YYF3 556 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 RASSF10A6NK89 507 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 B4DLN1 442 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 H3BQF6 201 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 SMAD7O15105 426 aaKnown RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 PJA2O43164 708 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 KLF4O43474 513 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 CCNT1O60563 726 aaKnown RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 CLSTN1O94985 981 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 KLRK1P26718 216 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 LMAN1P49257 510 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 CLCQ05315 142 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 LRRC63Q05C16 580 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 STK4Q13043 487 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 SERINC3Q13530 473 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 SETDB1Q15047 1291 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 ZSCAN26Q16670 478 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 MAN2A1Q16706 1144 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 TXNRD1Q16881 649 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 SLC35G1Q2M3R5 365 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 CCNI2Q6ZMN8 369 aaPredicted RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 C16orf86Q6ZW13 317 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 DMRTC2Q8IXT2 367 aaPredicted RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 GUF1Q8N442 669 aaKnown RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 MMGT1Q8N4V1 131 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 RNF10Q8N5U6 811 aaKnown RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 RBBP8NLQ8NC74 664 aaPredicted RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 TGFBRAP1Q8WUH2 860 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 SECISBP2LQ93073 1101 aaKnown RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 DYNLL2Q96FJ2 89 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 CNOT6LQ96LI5 555 aaKnown RBP6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 MTMR9Q96QG7 549 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 EYA3Q99504 573 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 TSG101Q99816 390 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 PIF1Q9H611 641 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 RIOX1Q9H6W3 641 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 RIC8AQ9NPQ8 531 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 ACTR10Q9NZ32 417 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 PLAGL2Q9UPG8 496 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 JRKLQ9Y4A0 524 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 MYH8P13535 1937 aa6.6□□□□□ -1.35
CHMP4A-210ENST00000552620 KIAA1551Q9HCM1 1747 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms