RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 EPHB4P54760 987 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 GTF2BQ00403 316 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 MLLT1Q03111 559 aaPredicted RBP23.31■■□□□ 1.32
VPS29-206ENST00000549578 PPIGQ13427 754 aaKnown RBP eCLIP23.31■■□□□ 1.32
VPS29-206ENST00000549578 NT5DC1Q5TFE4 455 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 ISM2Q6H9L7 571 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 CAVIN1Q6NZI2 390 aaKnown RBP23.31■■□□□ 1.32
VPS29-206ENST00000549578 PPP4R3CPQ6ZMV5 832 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 KIAA0895Q8NCT3 520 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 SEPT8Q92599 483 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 STRA6Q9BX79 667 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 TMX1Q9H3N1 280 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 IL23AQ9NPF7 189 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 RMND1Q9NWS8 449 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 MAN1B1Q9UKM7 699 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 TBX20Q9UMR3 447 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 GDAQ9Y2T3 454 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 BIN1O00499 593 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 KCNA1Q09470 495 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 STRN3Q13033 797 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 PSMD2Q13200 908 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 FAM187BQ17R55 369 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 CCDC183Q5T5S1 534 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 RPUSD2Q8IZ73 545 aaKnown RBP23.3■■□□□ 1.32
VPS29-206ENST00000549578 CPB2Q96IY4 423 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 AGPAT5Q9NUQ2 364 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 PIN4Q9Y237 131 aaKnown RBP23.3■■□□□ 1.32
VPS29-206ENST00000549578 PDE4DIPQ5VU43 2346 aa23.3■■□□□ 1.32
VPS29-206ENST00000549578 ACKR2O00590 384 aa23.29■■□□□ 1.32
VPS29-206ENST00000549578 PRPF6O94906 941 aaKnown RBP23.29■■□□□ 1.32
VPS29-206ENST00000549578 MAGEA10P43363 369 aaPredicted RBP23.29■■□□□ 1.32
VPS29-206ENST00000549578 PRPF4BQ13523 1007 aaKnown RBP23.29■■□□□ 1.32
VPS29-206ENST00000549578 C16orf59Q7L2K0 433 aa23.29■■□□□ 1.32
VPS29-206ENST00000549578 EPM2AIP1Q7L775 607 aaPredicted RBP23.29■■□□□ 1.32
VPS29-206ENST00000549578 KCNN1Q92952 543 aa23.29■■□□□ 1.32
VPS29-206ENST00000549578 PRIMPOLQ96LW4 560 aa23.29■■□□□ 1.32
VPS29-206ENST00000549578 PCDHB13Q9Y5F0 798 aa23.29■■□□□ 1.32
VPS29-206ENST00000549578 MGEA5O60502 916 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 PFKMP08237 780 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 ARF4P18085 180 aaPredicted RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 SCP2P22307 547 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 HOXA11P31270 313 aaPredicted RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 PCBP1Q15365 356 aaKnown RBP eCLIP23.28■■□□□ 1.32
VPS29-206ENST00000549578 CNKSR3Q6P9H4 555 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 SMYD4Q8IYR2 804 aaPredicted RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 IKZF4Q9H2S9 585 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 CNTNAP2Q9UHC6 1331 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 ALCAMQ13740 583 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 TMEM132AQ24JP5 1023 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 L1TD1Q5T7N2 865 aaKnown RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 STXBP4Q6ZWJ1 553 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 CDR2LQ86X02 465 aaPredicted RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 MAP4K3Q8IVH8 894 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 SCFD1Q8WVM8 642 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 APBB2Q92870 758 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 HVCN1Q96D96 273 aa23.28■■□□□ 1.32
VPS29-206ENST00000549578 TARS2Q9BW92 718 aaKnown RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 MRPL4Q9BYD3 311 aaKnown RBP23.28■■□□□ 1.32
VPS29-206ENST00000549578 EIF3DO15371 548 aaKnown RBP eCLIP23.27■■□□□ 1.32
VPS29-206ENST00000549578 ABCD1P33897 745 aa23.27■■□□□ 1.32
VPS29-206ENST00000549578 ZNF658Q5TYW1 1059 aaPredicted RBP23.27■■□□□ 1.32
VPS29-206ENST00000549578 ZNF365Q70YC5 407 aa23.27■■□□□ 1.32
VPS29-206ENST00000549578 NELFCDQ8IXH7 590 aa23.27■■□□□ 1.32
VPS29-206ENST00000549578 LINC01599Q8WXQ3 324 aa23.27■■□□□ 1.32
VPS29-206ENST00000549578 BICD1Q96G01 975 aa23.27■■□□□ 1.32
VPS29-206ENST00000549578 MAPK8IP1Q9UQF2 711 aa23.27■■□□□ 1.32
VPS29-206ENST00000549578 BMP6P22004 513 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 HOXD13P35453 343 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 NCBP1Q09161 790 aaKnown RBP23.26■■□□□ 1.31
VPS29-206ENST00000549578 MORC3Q14149 939 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 DSC3Q14574 896 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 SKOR2Q2VWA4 1001 aaPredicted RBP23.26■■□□□ 1.31
VPS29-206ENST00000549578 RBM43Q6ZSC3 357 aaKnown RBP23.26■■□□□ 1.31
VPS29-206ENST00000549578 OTOP2Q7RTS6 562 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 ZNF507Q8TCN5 953 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 SYAP1Q96A49 352 aaPredicted RBP23.26■■□□□ 1.31
VPS29-206ENST00000549578 ACCSQ96QU6 501 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 ADAM2Q99965 735 aa23.26■■□□□ 1.31
VPS29-206ENST00000549578 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.26■■□□□ 1.31
VPS29-206ENST00000549578 HNRNPDLO14979 420 aaKnown RBP23.25■■□□□ 1.31
VPS29-206ENST00000549578 AXLP30530 894 aa23.25■■□□□ 1.31
VPS29-206ENST00000549578 TMEM240Q5SV17 173 aa23.25■■□□□ 1.31
VPS29-206ENST00000549578 ATF7IP2Q5U623 682 aa23.25■■□□□ 1.31
VPS29-206ENST00000549578 NOTUMQ6P988 496 aa23.25■■□□□ 1.31
VPS29-206ENST00000549578 RTN4RL1Q86UN2 441 aaPredicted RBP23.25■■□□□ 1.31
VPS29-206ENST00000549578 ACO2Q99798 780 aaKnown RBP23.25■■□□□ 1.31
VPS29-206ENST00000549578 FTHL17Q9BXU8 183 aa23.25■■□□□ 1.31
VPS29-206ENST00000549578 PDZD7Q9H5P4 517 aa23.25■■□□□ 1.31
VPS29-206ENST00000549578 A0A1B0GUA9 196 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 FGBP02675 491 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 ZSCAN20P17040 1043 aaPredicted RBP23.24■■□□□ 1.31
VPS29-206ENST00000549578 IKBKEQ14164 716 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 EEF1DP3Q658K8 133 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 TWF2Q6IBS0 349 aaKnown RBP23.24■■□□□ 1.31
VPS29-206ENST00000549578 PSRC1Q6PGN9 363 aaPredicted RBP23.24■■□□□ 1.31
VPS29-206ENST00000549578 MYOCDQ8IZQ8 938 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 CHST12Q9NRB3 414 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 UBE4BO95155 1302 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 ZMYM2Q9UBW7 1377 aa23.24■■□□□ 1.31
VPS29-206ENST00000549578 MICAL3Q7RTP6 2002 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms