RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 TMEM121BQ9BXQ6 578 aaPredicted RBP17.48■□□□□ 0.39
CLSTN3-216ENST00000545663 DACT1Q9NYF0 836 aa17.48■□□□□ 0.39
CLSTN3-216ENST00000545663 CDH7Q9ULB5 785 aa17.48■□□□□ 0.39
CLSTN3-216ENST00000545663 IGSF10Q6WRI0 2623 aa17.48■□□□□ 0.39
CLSTN3-216ENST00000545663 HELZ2Q9BYK8 2649 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 NRP1O14786 923 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 NCAM2O15394 837 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 TGM5O43548 720 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 TOP3BO95985 862 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 SOD2P04179 222 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 ALDH2P05091 517 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 GPC3P51654 580 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 AASDHQ4L235 1098 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 ELMSAN1Q6PJG2 1045 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 GLYCTKQ8IVS8 523 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 ZNF687Q8N1G0 1237 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 FGF13Q92913 245 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 RRP36Q96EU6 259 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 RXFP1Q9HBX9 757 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 HEBP1Q9NRV9 189 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 DPP7Q9UHL4 492 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 FAN1Q9Y2M0 1017 aa17.47■□□□□ 0.39
CLSTN3-216ENST00000545663 FREM2Q5SZK8 3169 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 SPDYE3A6NKU9 549 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 CHURC1-FNTBB4DL54 471 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 F8W810 466 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 FNTBP49356 437 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 PFKPQ01813 784 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 ADCY1Q08828 1119 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 IMMTQ16891 758 aaKnown RBP17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 ZNF852Q6ZMS4 543 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 ITFG1Q8TB96 612 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 PGBD1Q96JS3 809 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 SCLT1Q96NL6 688 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 MAP7D2Q96T17 732 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 HERC2P3Q9BVR0 1158 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 CNNM2Q9H8M5 875 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 MARCH5Q9NX47 278 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 ZDHHC7Q9NXF8 308 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 NDRG2Q9UN36 371 aaKnown RBP17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 ZFP37Q9Y6Q3 630 aaPredicted RBP17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 RALGAPA1Q6GYQ0 2036 aa17.46■□□□□ 0.39
CLSTN3-216ENST00000545663 hCG_1642624A0A1W2PR95 340 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 CARNS1A5YM72 827 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 KIF5BP33176 963 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 LIMK1P53667 647 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 PDE1AP54750 535 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 STPG1Q5TH74 334 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 TWF2Q6IBS0 349 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 PSAPL1Q6NUJ1 521 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 HDAC7Q8WUI4 952 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 PLA2G2FQ9BZM2 168 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 PLEKHA4Q9H4M7 779 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 WASF3Q9UPY6 502 aa17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 PRG3Q9Y2Y8 225 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-216ENST00000545663 IFIT3O14879 490 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 GIPC1O14908 333 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 POMCP01189 267 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 RPL17P18621 184 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 SDSP20132 328 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 HOXC13P31276 330 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 GLUD2P49448 558 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 MFAP1P55081 439 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 SATB1Q01826 763 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 FOXC1Q12948 553 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 LILRA6Q6PI73 481 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 MTSS1LQ765P7 747 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 CMTR1Q8N1G2 835 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 FAM160A2Q8N612 972 aaPredicted RBP17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 NLRP7Q8WX94 980 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 RILPL2Q969X0 211 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 PHF20Q9BVI0 1012 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 TRAIPQ9BWF2 469 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 CHRDQ9H2X0 955 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 CHST12Q9NRB3 414 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 FAM105AQ9NUU6 356 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 STK39Q9UEW8 545 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 MAFBQ9Y5Q3 323 aaPredicted RBP17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 SDK1Q7Z5N4 2213 aa17.44■□□□□ 0.38
CLSTN3-216ENST00000545663 TAF4O00268 1085 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 MAGEB2O15479 319 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 DHX15O43143 795 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 ZMYND10O75800 440 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 EFEMP2O95967 443 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 DRP2Q13474 957 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 CEP55Q53EZ4 464 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 MIS18BP1Q6P0N0 1132 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 CWC27Q6UX04 472 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 AGMOQ6ZNB7 445 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 LSM14BQ9BX40 385 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 SPZ1Q9BXG8 430 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 RCAN3Q9UKA8 241 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 PCDHB15Q9Y5E8 787 aa17.43■□□□□ 0.38
CLSTN3-216ENST00000545663 MEIS1O00470 390 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 AXIN1O15169 862 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 PLEKHA8P1O95397 391 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 TMOD1P28289 359 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 DSG1Q02413 1049 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 HEATR6Q6AI08 1181 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms