RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 HIDE1A8MVS5 230 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 DCXO43602 365 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 OR52Z1P0C646 297 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 HOXA11P31270 313 aaPredicted RBP22.1■■□□□ 1.13
CHD4-213ENST00000545584 TECP42680 631 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 TMEM87AQ8NBN3 555 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 CCDC51Q96ER9 411 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 FAM193BQ96PV7 902 aaPredicted RBP22.1■■□□□ 1.13
CHD4-213ENST00000545584 GBP3Q9H0R5 595 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 NRDE2Q9H7Z3 1164 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 KANSL3Q9P2N6 904 aa22.1■■□□□ 1.13
CHD4-213ENST00000545584 USP15Q9Y4E8 981 aaPredicted RBP22.1■■□□□ 1.13
CHD4-213ENST00000545584 USO1O60763 962 aaKnown RBP22.09■■□□□ 1.13
CHD4-213ENST00000545584 ARL2P36404 184 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 TRAPPC10P48553 1259 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 RBM10P98175 930 aaKnown RBP22.09■■□□□ 1.13
CHD4-213ENST00000545584 TTC38Q5R3I4 469 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 NOTUMQ6P988 496 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 TMEM184AQ6ZMB5 413 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 AGMOQ6ZNB7 445 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 IFNLR1Q8IU57 520 aaPredicted RBP22.09■■□□□ 1.13
CHD4-213ENST00000545584 NOSTRINQ8IVI9 506 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 MRPL43Q8N983 215 aaKnown RBP22.09■■□□□ 1.13
CHD4-213ENST00000545584 ASAP3Q8TDY4 903 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 NACC1Q96RE7 527 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 UBN1Q9NPG3 1134 aa22.09■■□□□ 1.13
CHD4-213ENST00000545584 A0A087WWV3 80 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 FAM86C2PA6NEL3 165 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 CXCL14O95715 111 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 GALTP07902 379 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 SPATA31C1P0DKV0 1188 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 ITGA4P13612 1032 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 NCLP19338 710 aaKnown RBP22.08■■□□□ 1.13
CHD4-213ENST00000545584 CAPSQ13938 189 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 UBXN11Q5T124 520 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 LLGL2Q6P1M3 1020 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 CATSPER3Q86XQ3 398 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 VPS52Q8N1B4 723 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 MCPH1Q8NEM0 835 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 VN1R2Q8NFZ6 395 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 CASP10Q92851 521 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 IGSF21Q96ID5 467 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 POLR3CQ9BUI4 534 aaPredicted RBP22.08■■□□□ 1.13
CHD4-213ENST00000545584 POLR3FQ9H1D9 316 aaPredicted RBP22.08■■□□□ 1.13
CHD4-213ENST00000545584 KIF3AQ9Y496 699 aa22.08■■□□□ 1.13
CHD4-213ENST00000545584 C2orf71A6NGG8 1288 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 ST18O60284 1047 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 TSPAN1O60635 241 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 HOXB8P17481 243 aaPredicted RBP22.07■■□□□ 1.12
CHD4-213ENST00000545584 GLRA2P23416 452 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 GIT2Q14161 759 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 RABEP1Q15276 862 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 ANKRD54Q6NXT1 300 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 DDX53Q86TM3 631 aaKnown RBP22.07■■□□□ 1.12
CHD4-213ENST00000545584 HACE1Q8IYU2 909 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 NFKBIZQ9BYH8 718 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 TRIM6Q9C030 488 aaPredicted RBP22.07■■□□□ 1.12
CHD4-213ENST00000545584 RAPGEFL1Q9UHV5 662 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 DBR1Q9UK59 544 aaKnown RBP22.07■■□□□ 1.12
CHD4-213ENST00000545584 HCN4Q9Y3Q4 1203 aa22.07■■□□□ 1.12
CHD4-213ENST00000545584 MED24O75448 989 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 ALDH2P05091 517 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 RPA1P27694 616 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 MBTD1Q05BQ5 628 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 KCNC3Q14003 757 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 HAUS3Q68CZ6 603 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 MAEAQ7L5Y9 396 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 CPB2Q96IY4 423 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 TMEM175Q9BSA9 504 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 PHF7Q9BWX1 381 aaPredicted RBP22.06■■□□□ 1.12
CHD4-213ENST00000545584 CSRNP2Q9H175 543 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 UPF2Q9HAU5 1272 aaKnown RBP22.06■■□□□ 1.12
CHD4-213ENST00000545584 C11orf16Q9NQ32 467 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 DNAJB4Q9UDY4 337 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 STK39Q9UEW8 545 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 IPPQ9Y573 584 aa22.06■■□□□ 1.12
CHD4-213ENST00000545584 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.05■■□□□ 1.12
CHD4-213ENST00000545584 LRRIQ4A6NIV6 560 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 PRR33A8MZF0 331 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 POMCP01189 267 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 CTSAP10619 480 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 SLC11A1P49279 550 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 TMEM173Q86WV6 379 aaPredicted RBP22.05■■□□□ 1.12
CHD4-213ENST00000545584 ZNF280BQ86YH2 543 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 RNF135Q8IUD6 432 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 SMG8Q8ND04 991 aaKnown RBP22.05■■□□□ 1.12
CHD4-213ENST00000545584 EIF2AQ9BY44 585 aaKnown RBP22.05■■□□□ 1.12
CHD4-213ENST00000545584 ZBP1Q9H171 429 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 FAN1Q9Y2M0 1017 aa22.05■■□□□ 1.12
CHD4-213ENST00000545584 ARHGEF35A5YM69 484 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 CLASP2O75122 1294 aaKnown RBP22.04■■□□□ 1.12
CHD4-213ENST00000545584 ARF4P18085 180 aaPredicted RBP22.04■■□□□ 1.12
CHD4-213ENST00000545584 MUTP22033 750 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 TPRNQ4KMQ1 711 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 POTEGQ6S5H5 508 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 ZBTB8OSQ8IWT0 167 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 SUSD6Q92537 303 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 RAB34Q9BZG1 259 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 GPRC5CQ9NQ84 441 aa22.04■■□□□ 1.12
CHD4-213ENST00000545584 HCFC2Q9Y5Z7 792 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms