RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 A0A0U1RQF3 1178 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 CCDC169A6NNP5 214 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 DGKIO75912 1065 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 KRT18P05783 430 aaKnown RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 SKIP12755 728 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 AXLP30530 894 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 STAT6P42226 847 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 EFNA5P52803 228 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 RAD51AP2Q09MP3 1159 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 DMP1Q13316 513 aaPredicted RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 MCM6Q14566 821 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 ARSHQ5FYA8 562 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 CDCA2Q69YH5 1023 aaPredicted RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 TWF2Q6IBS0 349 aaKnown RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 SHC4Q6S5L8 630 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 GPBP1Q86WP2 473 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 LEO1Q8WVC0 666 aaPredicted RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 BSNDQ8WZ55 320 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 PRIMPOLQ96LW4 560 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 NTPCRQ9BSD7 190 aaKnown RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 PANK2Q9BZ23 570 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 PRMT7Q9NVM4 692 aaPredicted RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 FAM13BQ9NYF5 915 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 ODF2LQ9ULJ1 636 aa13.7□□□□□ -0.22
VPS33A-207ENST00000542790 RBM19Q9Y4C8 960 aaKnown RBP13.7□□□□□ -0.22
VPS33A-207ENST00000542790 SCN5AQ14524 2016 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 KAT6AQ92794 2004 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 TSPAN1O60635 241 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 EOMESO95936 686 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 PLS3P13797 630 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 IBSPP21815 317 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-207ENST00000542790 HOXA11P31270 313 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-207ENST00000542790 NPTX2P47972 431 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 RAB27AP51159 221 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 SMTNP53814 917 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 PEX3P56589 373 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 MAPK7Q13164 816 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 MAPK6Q16659 721 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 NOTUMQ6P988 496 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 Q7L0L9 218 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 SV2BQ7L1I2 683 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 SPNS2Q8IVW8 549 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 DAW1Q8N136 415 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 LRRC15Q8TF66 581 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 CCDC51Q96ER9 411 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 TTYH1Q9H313 450 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-207ENST00000542790 FZD8Q9H461 694 aa13.69□□□□□ -0.22
VPS33A-207ENST00000542790 LARSQ9P2J5 1176 aaKnown RBP13.69□□□□□ -0.22
VPS33A-207ENST00000542790 PHLPP2Q6ZVD8 1323 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 NPHP3-ACAD11A0A0J9YXS1 232 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 LCHNA4D1U4 455 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 SFI1A8K8P3 1242 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 K7ERI5 159 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 HOXA2O43364 376 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 ZNF623O75123 536 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 TAP1Q03518 808 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 BTG3Q14201 252 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-207ENST00000542790 AMHR2Q16671 573 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 FAM187BQ17R55 369 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 NAALADL2Q58DX5 795 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 RESP18Q5W5W9 173 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 ADALQ6DHV7 355 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 ECHDC2Q86YB7 292 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 FIBCD1Q8N539 461 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 PDILTQ8N807 584 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 IQUBQ8NA54 791 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 SPIRE2Q8WWL2 714 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 ZNF689Q96CS4 500 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-207ENST00000542790 FAM161BQ96MY7 647 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 REEP2Q9BRK0 252 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 PYM1Q9BRP8 204 aaKnown RBP13.68□□□□□ -0.22
VPS33A-207ENST00000542790 LRRC27Q9C0I9 530 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 CUEDC2Q9H467 287 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 KMT5AQ9NQR1 393 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 FAM105AQ9NUU6 356 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 MTMR10Q9NXD2 777 aa13.68□□□□□ -0.22
VPS33A-207ENST00000542790 A0A087X0B3 334 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 A0A1B0GUA9 196 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 LINC01553A4QN01 128 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 H0YCG3 227 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 ACKR2O00590 384 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 TBCAO75347 108 aaKnown RBP13.67□□□□□ -0.22
VPS33A-207ENST00000542790 FAM13AO94988 1023 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 SCP2P22307 547 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 PLCB2Q00722 1185 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 PRPF4BQ13523 1007 aaKnown RBP13.67□□□□□ -0.22
VPS33A-207ENST00000542790 GIT2Q14161 759 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 ZNF598Q86UK7 904 aaKnown RBP13.67□□□□□ -0.22
VPS33A-207ENST00000542790 CMTR2Q8IYT2 770 aaKnown RBP13.67□□□□□ -0.22
VPS33A-207ENST00000542790 RNF169Q8NCN4 708 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 CNNM3Q8NE01 707 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 PGBD4Q96DM1 585 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 CHAMP1Q96JM3 812 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 KIFC3Q9BVG8 833 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 CCDC113Q9H0I3 377 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 TMEM134Q9H6X4 195 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 RC3H2Q9HBD1 1191 aaKnown RBP13.67□□□□□ -0.22
VPS33A-207ENST00000542790 PARVGQ9HBI0 331 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 PCDHB2Q9Y5E7 798 aa13.67□□□□□ -0.22
VPS33A-207ENST00000542790 ADGRA3Q8IWK6 1321 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms