RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 FESP07332 822 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 HSD17B4P51659 736 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 HIRAP54198 1017 aaPredicted RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 ASIC1P78348 528 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 DMPKQ09013 629 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 PABPC4Q13310 644 aaKnown RBP eCLIP8.63□□□□□ -1.033e-8■□□□□ 9.8
PDLIM5-221ENST00000542407 KRT31Q15323 416 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 ACCSLQ4AC99 568 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 NLRP14Q86W24 1093 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 FAM228AQ86W67 206 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 FUKQ8N0W3 1084 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 NOC3LQ8WTT2 800 aaKnown RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 DNAJC19Q96DA6 116 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 LRRC1Q9BTT6 524 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 IFT122Q9HBG6 1241 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 ABHD10Q9NUJ1 306 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 DMGDHQ9UI17 866 aaKnown RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 ZNF510Q9Y2H8 683 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 EPN1Q9Y6I3 576 aaPredicted RBP8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 IKBKGQ9Y6K9 419 aa8.63□□□□□ -1.03
PDLIM5-221ENST00000542407 RPTORQ8N122 1335 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 KDM3AQ9Y4C1 1321 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 PVALEFA0A1B0GWK0 134 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 MACROD2A1Z1Q3 448 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 GOLGA6L10A6NI86 522 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 BACH1O14867 736 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 SPATA31C1P0DKV0 1188 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 IDEP14735 1019 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 CLK1P49759 484 aaKnown RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 SH3BGRP55822 239 aaPredicted RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 AMPD3Q01432 767 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 TCP11X2Q5H9J9 407 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 ANGEL2Q5VTE6 544 aaKnown RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC30A9Q6PML9 568 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 UNC13DQ70J99 1090 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 LCA5Q86VQ0 697 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 GPC2Q8N158 579 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 AENQ8WTP8 325 aaKnown RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 CLEC4DQ8WXI8 215 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 CTNNBL1Q8WYA6 563 aaPredicted RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC68Q9H2F9 335 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 WDR90Q96KV7 1748 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 POTEB3A0JP26 581 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 POTECB2RU33 542 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 GCOM1H8Y6P7 765 aaPredicted RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 BUB1BO60566 1050 aaPredicted RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 POLR2MP0CAP2 368 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC8A3P57103 927 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 TAGLNQ01995 201 aaKnown RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 POTEBQ6S5H4 581 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 RNF168Q8IYW5 571 aaPredicted RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 MYCBPAPQ8TBZ2 947 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 CENPTQ96BT3 561 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 DHTKD1Q96HY7 919 aaPredicted RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 FAM20AQ96MK3 541 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.62□□□□□ -1.034e-6■□□□□ 11.2
PDLIM5-221ENST00000542407 QPCTLQ9NXS2 382 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 MRPL11Q9Y3B7 192 aaKnown RBP8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 LOC285556D6RIA3 1793 aa8.62□□□□□ -1.03
PDLIM5-221ENST00000542407 H7C1D1 291 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 NDUFA10O95299 355 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CFBP00751 764 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SKOR1P84550 965 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 MYO1EQ12965 1108 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 MTMR2Q13614 643 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PTGISQ16647 500 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 NANOGNBQ7Z5D8 188 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 C14orf80Q86SX3 495 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 APOBEC3FQ8IUX4 373 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SCYL3Q8IZE3 742 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 WHAMMQ8TF30 809 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 LMBR1Q8WVP7 490 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CDK5RAP3Q96JB5 506 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 ZIM3Q96PE6 472 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CTAGE1Q96RT6 745 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 NT5C3AQ9H0P0 336 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC38A10Q9HBR0 1119 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 TAB2Q9NYJ8 693 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SMARCAL1Q9NZC9 954 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 COL20A1Q9P218 1284 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 FZD1Q9UP38 647 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 FRMPD4Q14CM0 1322 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 KCNJ18B7U540 433 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 E9PMD0 336 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 MTRF1O75570 445 aaKnown RBP8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PTPRAP18433 802 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 NR1D1P20393 614 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 RRM1P23921 792 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 EPS15P42566 896 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SLC12A3P55017 1021 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 KCNJ12Q14500 433 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 SPRED3Q2MJR0 410 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 PRAMEF18Q5VWM3 479 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 IQCEQ6IPM2 695 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CATSPER3Q86XQ3 398 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC50Q8IVM0 306 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 DCLK2Q8N568 766 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 IFT81Q8WYA0 676 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 P2RX5Q93086 422 aa8.61□□□□□ -1.03
PDLIM5-221ENST00000542407 CCDC43Q96MW1 224 aaKnown RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms