RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 RSAD1Q9HA92 442 aa17.27■□□□□ 0.36
RTN3-211ENST00000542238 IFT122Q9HBG6 1241 aa17.27■□□□□ 0.36
RTN3-211ENST00000542238 MRPL17Q9NRX2 175 aaKnown RBP17.27■□□□□ 0.36
RTN3-211ENST00000542238 FAN1Q9Y2M0 1017 aa17.27■□□□□ 0.36
RTN3-211ENST00000542238 PPME1Q9Y570 386 aa17.27■□□□□ 0.36
RTN3-211ENST00000542238 C2orf16Q68DN1 1984 aa17.27■□□□□ 0.36
RTN3-211ENST00000542238 CFAP54Q96N23 3096 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 M0R2N6 131 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 SRGAP2CP0DJJ0 459 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 NBL1P41271 181 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 CLCN4P51793 760 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 TDGQ13569 410 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 INF2Q27J81 1249 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 ELMSAN1Q6PJG2 1045 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 AGMOQ6ZNB7 445 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 RUFY3Q7L099 469 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 KRT25Q7Z3Z0 450 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 MRPL10Q7Z7H8 261 aaKnown RBP17.26■□□□□ 0.35
RTN3-211ENST00000542238 FLCNQ8NFG4 579 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 PSPC1Q8WXF1 523 aaKnown RBP17.26■□□□□ 0.35
RTN3-211ENST00000542238 CEP170P1Q96L14 293 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 VN1R3Q9BXE9 311 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 SSX2IPQ9Y2D8 614 aa17.26■□□□□ 0.35
RTN3-211ENST00000542238 FAM186AA6NE01 2351 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 DDHD2O94830 711 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 P4HBP07237 508 aaKnown RBP17.25■□□□□ 0.35
RTN3-211ENST00000542238 CNPP09543 421 aaKnown RBP17.25■□□□□ 0.35
RTN3-211ENST00000542238 RFC5P40937 340 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 NPEPPSP55786 919 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 PPP2R5CQ13362 524 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 LETM2Q2VYF4 491 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 C15orf39Q6ZRI6 1047 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 CNNM3Q8NE01 707 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 PRPF31Q8WWY3 499 aaKnown RBP17.25■□□□□ 0.35
RTN3-211ENST00000542238 FAM20AQ96MK3 541 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 UBN1Q9NPG3 1134 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 DPP7Q9UHL4 492 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 FBXL21Q9UKT6 434 aa17.25■□□□□ 0.35
RTN3-211ENST00000542238 CCDC194A0A1B0GVG4 234 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 EML1O00423 815 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 ASAP2O43150 1006 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 SLC37A4O43826 429 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 MARCH6O60337 910 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 B4GALT3O60512 393 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 POMCP01189 267 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 URODP06132 367 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 LAMTOR4Q0VGL1 99 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 TOB2Q14106 344 aaPredicted RBP17.24■□□□□ 0.35
RTN3-211ENST00000542238 OTUD6AQ7L8S5 288 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 ASCL5Q7RTU5 278 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 TCP11Q8WWU5 503 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 TMEM143Q96AN5 459 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 ZNF274Q96GC6 653 aaPredicted RBP17.24■□□□□ 0.35
RTN3-211ENST00000542238 DHX33Q9H6R0 707 aaKnown RBP17.24■□□□□ 0.35
RTN3-211ENST00000542238 CYP46A1Q9Y6A2 500 aa17.24■□□□□ 0.35
RTN3-211ENST00000542238 TDRD15B5MCY1 1934 aaKnown RBP17.23■□□□□ 0.35
RTN3-211ENST00000542238 PRR23AA6NEV1 266 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 C2CD2LO14523 706 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 NRP1O14786 923 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 GAS2O43903 313 aaKnown RBP17.23■□□□□ 0.35
RTN3-211ENST00000542238 LILRB3O75022 631 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 ERLIN2O94905 339 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 SOD2P04179 222 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 ADH1AP07327 375 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 ITGA4P13612 1032 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 GCFC2P16383 781 aaKnown RBP17.23■□□□□ 0.35
RTN3-211ENST00000542238 NCLP19338 710 aaKnown RBP17.23■□□□□ 0.35
RTN3-211ENST00000542238 AK2P54819 239 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 NCBP1Q09161 790 aaKnown RBP17.23■□□□□ 0.35
RTN3-211ENST00000542238 NKD2Q969F2 451 aaPredicted RBP17.23■□□□□ 0.35
RTN3-211ENST00000542238 MINDY3Q9H8M7 445 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 KCNK12Q9HB15 430 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 ZSWIM6Q9HCJ5 1215 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 IGSF9Q9P2J2 1179 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 VAV3Q9UKW4 847 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 DUSP12Q9UNI6 340 aa17.23■□□□□ 0.35
RTN3-211ENST00000542238 ARID2Q68CP9 1835 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 NR1I2O75469 434 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 AOC1P19801 751 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 HOXA11P31270 313 aaPredicted RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 OR1G1P47890 313 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 AFF1P51825 1210 aaKnown RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 FOXK2Q01167 660 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 PCBP1Q15365 356 aaKnown RBP eCLIP17.22■□□□□ 0.351e-11■■■□□ 14.6
RTN3-211ENST00000542238 NPY5RQ15761 445 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 UBXN11Q5T124 520 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 PPP4R3AQ6IN85 833 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 CYP26C1Q6V0L0 522 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 NEK8Q86SG6 692 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 C4orf19Q8IY42 314 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 ZNF579Q8NAF0 562 aaKnown RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 RNF149Q8NC42 400 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 CMASQ8NFW8 434 aaPredicted RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 FEZF2Q8TBJ5 459 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 STAMQ92783 540 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 AIFM3Q96NN9 605 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 RPS6KC1Q96S38 1066 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 NAP1L4Q99733 375 aaKnown RBP17.22■□□□□ 0.35
RTN3-211ENST00000542238 RTP3Q9BQQ7 232 aa17.22■□□□□ 0.35
RTN3-211ENST00000542238 HERC2P3Q9BVR0 1158 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms