RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 RAVER2Q9HCJ3 691 aaKnown RBP11.29□□□□□ -0.6
CHFR-219ENST00000541341 C6orf50Q9HD87 102 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 HOMER2Q9NSB8 354 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 TMEM39AQ9NV64 488 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 HDAC6Q9UBN7 1215 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 PARP2Q9UGN5 583 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 PHF24Q9UPV7 400 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 PCDHGC5Q9Y5F6 944 aa11.29□□□□□ -0.6
CHFR-219ENST00000541341 SPTBN5Q9NRC6 3674 aaKnown RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 PALM3A6NDB9 673 aaPredicted RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 GRXCR1A8MXD5 290 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 ADCY6O43306 1168 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 KLRC4O43908 158 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 HEXIM1O94992 359 aaKnown RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 SNAI1O95863 264 aaPredicted RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 OR52Z1P0C646 297 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 AKR1A1P14550 325 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 NPEPPSP55786 919 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 ASIC1P78348 528 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 FKBP3Q00688 224 aaKnown RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 ZNF543Q08ER8 600 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 PTPN21Q16825 1174 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 ASPRV1Q53RT3 343 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 GPATCH4Q5T3I0 446 aaKnown RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 RNF187Q5TA31 235 aaPredicted RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 SLFN13Q68D06 897 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 BTNL9Q6UXG8 535 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 C4orf32Q8N8J7 132 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 GPATCH11Q8N954 259 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 MYCBPAPQ8TBZ2 947 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 ACTRT1Q8TDG2 376 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 SGSM3Q96HU1 749 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 CCDC43Q96MW1 224 aaKnown RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 TRIM9Q9C026 710 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 LACRTQ9GZZ8 138 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 GLT8D2Q9H1C3 349 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 TMBIM4Q9HC24 238 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 STARD7Q9NQZ5 370 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 MAD2L2Q9UI95 211 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 ADAMTS5Q9UNA0 930 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 GDAQ9Y2T3 454 aa11.28□□□□□ -0.6
CHFR-219ENST00000541341 CTDP1Q9Y5B0 961 aaPredicted RBP11.28□□□□□ -0.6
CHFR-219ENST00000541341 A0A0A6YYK5 440 aaPredicted RBP11.27□□□□□ -0.61
CHFR-219ENST00000541341 ESYT2A0FGR8 921 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 C5orf60A6NFR6 353 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 SRGAP2O75044 1071 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 ADAMTS4O75173 837 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 RASSF9O75901 435 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 DNAJC8O75937 253 aaPredicted RBP11.27□□□□□ -0.61
CHFR-219ENST00000541341 C6orf222P0C671 652 aaPredicted RBP11.27□□□□□ -0.61
CHFR-219ENST00000541341 BMP3P12645 472 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 EIF4A3P38919 411 aaKnown RBP11.27□□□□□ -0.61
CHFR-219ENST00000541341 ACLYP53396 1101 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 SNAP25P60880 206 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 FPGSQ05932 587 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 FAAP100Q0VG06 881 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 RIPK1Q13546 671 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 ITIH4Q14624 930 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 NONOQ15233 471 aaKnown RBP eCLIP11.27□□□□□ -0.614e-7■■■■□ 21.1
CHFR-219ENST00000541341 RPS6KA1Q15418 735 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 KCNA10Q16322 511 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 SLC18A3Q16572 532 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 ODF2Q5BJF6 829 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 PDXDC1Q6P996 788 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 CCDC82Q8N4S0 544 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 ATRIPQ8WXE1 791 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 DUSP9Q99956 384 aaKnown RBP11.27□□□□□ -0.61
CHFR-219ENST00000541341 PPP1R12CQ9BZL4 782 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 NT5C3AQ9H0P0 336 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 MMRN2Q9H8L6 949 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 ATP6V0A4Q9HBG4 840 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 EPB41L5Q9HCM4 733 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 PRDM6Q9NQX0 595 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 AGPAT5Q9NUQ2 364 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 MTMR7Q9Y216 660 aa11.27□□□□□ -0.61
CHFR-219ENST00000541341 CCDC169A6NNP5 214 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 E7EVH7 732 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 RNF225M0QZC1 329 aaPredicted RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 PDE2AO00408 941 aaPredicted RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 ACRP10323 421 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 GCFC2P16383 781 aaKnown RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 ATP5DP30049 168 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 CDC25AP30304 524 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 ELF1P32519 619 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 PBX2P40425 430 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 SLC1A4P43007 532 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 MARSP56192 900 aaKnown RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 PPP2R2AP63151 447 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 BEX3Q00994 111 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 GUCY2DQ02846 1103 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 ITGB3BPQ13352 177 aaPredicted RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 XRCC4Q13426 336 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 GRIN2CQ14957 1233 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 NPY5RQ15761 445 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 ZKSCAN8Q15776 578 aaPredicted RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 MIIPQ5JXC2 388 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 MEI1Q5TIA1 1274 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 ANKRD40Q6AI12 368 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 TYW1BQ6NUM6 668 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 C6orf89Q6UWU4 347 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms