RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PHLPP2Q6ZVD8 1323 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TRIM49BA6NDI0 452 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 INO80B-WBP1J3KQ70 363 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TGFB1I1O43294 461 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 EDN1P05305 212 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 IQCF3P0C7M6 154 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 SCP2P22307 547 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 BMP8BP34820 402 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 MGAT3Q09327 533 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 ZNF710Q8N1W2 664 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TMEM40Q8WWA1 233 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TOX2Q96NM4 488 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 GCOM2Q9BZD3 368 aaPredicted RBP20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 INO80BQ9C086 356 aaPredicted RBP20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 NAT10Q9H0A0 1025 aaKnown RBP20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 FZD8Q9H461 694 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 RWDD2AQ9UIY3 292 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 USP20Q9Y2K6 914 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TRPV2Q9Y5S1 764 aa20.78■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TLR3O15455 904 aaKnown RBP20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 CHRNA1P02708 482 aa20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 DARSP14868 501 aaKnown RBP20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 ABCD1P33897 745 aa20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 CRYBB1P53674 252 aaPredicted RBP20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 ZCWPW2Q504Y3 356 aa20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 SRGAP1Q7Z6B7 1085 aa20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 TMEM206Q9H813 350 aa20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 CBX8Q9HC52 389 aa20.77■□□□□ 0.92
TNFRSF1A-213ENST00000540022 LAMA2P24043 3122 aaKnown RBP20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 A0A1W2PPC1 479 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TTLL13PA6NNM8 815 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 DCDC2CA8MYV0 355 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 M0QZ92 97 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 CAVIN2O95810 425 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PRKCBP05771 671 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 CKBP12277 381 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 EIF4BP23588 611 aaKnown RBP20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 STRN3Q13033 797 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 IQCB1Q15051 598 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 MAPK6Q16659 721 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 ZNF618Q5T7W0 954 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 ANKRD40Q6AI12 368 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TTI2Q6NXR4 508 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 SYCP3Q8IZU3 236 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 FAM200AQ8TCP9 573 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 BPIFA3Q9BQP9 254 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 KAT6AQ92794 2004 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 EVPLQ92817 2033 aa20.76■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TRIP12Q14669 1992 aaPredicted RBP20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TRIM43BA6NCK2 446 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TISP43B9A030 160 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PDXKO00764 312 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 CAND2O75155 1236 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 FGFR4P22455 802 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 ITGB8P26012 769 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 RBL2Q08999 1139 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 AMHR2Q16671 573 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 FAM26DQ5JW98 314 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 AOPEPQ8N6M6 819 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 RNF214Q8ND24 703 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 ENOX1Q8TC92 643 aaKnown RBP20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TRIM43Q96BQ3 446 aaPredicted RBP20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TARS2Q9BW92 718 aaKnown RBP20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 GBP3Q9H0R5 595 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TYW1Q9NV66 732 aaKnown RBP20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TBX21Q9UL17 535 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 EXOC7Q9UPT5 735 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TRAF3IP3Q9Y228 551 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 UMODL1Q5DID0 1318 aa20.75■□□□□ 0.91
TNFRSF1A-213ENST00000540022 ANKRD63C9JTQ0 380 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 ACKR2O00590 384 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 B4GALT5O43286 388 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 CLTBP09497 229 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 FAM187BQ17R55 369 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 SLC39A4Q6P5W5 647 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TRAF7Q6Q0C0 670 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 DHX40Q8IX18 779 aaKnown RBP20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 CAGE1Q8TC20 777 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 DUSP9Q99956 384 aaKnown RBP20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 OSBPL7Q9BZF2 842 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 RBSNQ9H1K0 784 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PRMT7Q9NVM4 692 aaPredicted RBP20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 MYH11P35749 1972 aa20.74■□□□□ 0.91
TNFRSF1A-213ENST00000540022 BICDL2A1A5D9 508 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PIGRP01833 764 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 MYL5Q02045 173 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 LRRC63Q05C16 580 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 NCAPHQ15003 741 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PPP4R3CPQ6ZMV5 832 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 LUZP1Q86V48 1076 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 BICD1Q96G01 975 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PRDM5Q9NQX1 630 aaPredicted RBP20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 AGPAT3Q9NRZ7 376 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TMEM39AQ9NV64 488 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 HNRNPDLO14979 420 aaKnown RBP20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 CLIC2O15247 247 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 PRIMPOLQ96LW4 560 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 TSG101Q99816 390 aa20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 NOC4LQ9BVI4 516 aaKnown RBP20.73■□□□□ 0.91
TNFRSF1A-213ENST00000540022 MRPL4Q9BYD3 311 aaKnown RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms