RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 MSL3Q8N5Y2 521 aaKnown RBP5.18□□□□□ -1.58
VPS13A-213ENST00000539950 CDYL2Q8N8U2 506 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 NRDE2Q9H7Z3 1164 aa5.18□□□□□ -1.58
VPS13A-213ENST00000539950 MRPL42Q9Y6G3 142 aaKnown RBP5.18□□□□□ -1.58
VPS13A-213ENST00000539950 ST20-MTHFSA0A0A6YYL1 179 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 PRSS38A1L453 326 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 GOLGA6L6A8MZA4 724 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 SEC24DO94855 1032 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 NR4A1P22736 598 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 CASRP41180 1078 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 ADCYAP1R1P41586 468 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 PURAQ00577 322 aaKnown RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 TERF2Q15554 542 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 KRTAP15-1Q3LI76 137 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 DALRD3Q5D0E6 543 aaKnown RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 GPR158Q5T848 1215 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 NAIF1Q69YI7 327 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 APBB1IPQ7Z5R6 666 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 MRGPREQ86SM8 312 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 RPUSD2Q8IZ73 545 aaKnown RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 ZNF610Q8N9Z0 462 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 SLC25A43Q8WUT9 341 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 GAB3Q8WWW8 586 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 AGAP2Q99490 1192 aa5.17□□□□□ -1.58
VPS13A-213ENST00000539950 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS13A-213ENST00000539950 CDC45O75419 566 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 SCNN1BP51168 640 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 INHBEP58166 350 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 JAZF1Q86VZ6 243 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 CXorf67Q86X51 503 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-213ENST00000539950 PPM1KQ8N3J5 372 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 ZNF276Q8N554 614 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 OR5M3Q8NGP4 307 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 PRRX2Q99811 253 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 CPPED1Q9BRF8 314 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-213ENST00000539950 TTPALQ9BTX7 342 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 CPEB1Q9BZB8 566 aaKnown RBP5.16□□□□□ -1.58
VPS13A-213ENST00000539950 TMPRSS11EQ9UL52 423 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 SORCS3Q9UPU3 1222 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 PPP2R3BQ9Y5P8 575 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 DMRT1Q9Y5R6 373 aa5.16□□□□□ -1.58
VPS13A-213ENST00000539950 NRP1O14786 923 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 LSP1P33241 339 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 PTGS2P35354 604 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 LSSP48449 732 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 IL2P60568 153 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 MGAT5Q09328 741 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 SART3Q15020 963 aaKnown RBP5.15□□□□□ -1.59
VPS13A-213ENST00000539950 DCAF17Q5H9S7 520 aaPredicted RBP5.15□□□□□ -1.59
VPS13A-213ENST00000539950 RHOUQ7L0Q8 258 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 TAS1R1Q7RTX1 841 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 LYSMD2Q8IV50 215 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 AHI1Q8N157 1196 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 HAS1Q92839 578 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 FEZ1Q99689 392 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 MLST8Q9BVC4 326 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 ANO3Q9BYT9 981 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 EPC1Q9H2F5 836 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 PRDM12Q9H4Q4 367 aa5.15□□□□□ -1.59
VPS13A-213ENST00000539950 A0A1W2PR48 441 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 FOXN1O15353 648 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 RAMP2O60895 175 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 FKBP9O95302 570 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 ZFP36P26651 326 aaKnown RBP5.14□□□□□ -1.59
VPS13A-213ENST00000539950 GPR15P49685 360 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 MANFP55145 182 aaKnown RBP5.14□□□□□ -1.59
VPS13A-213ENST00000539950 OCRLQ01968 901 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 PPARAQ07869 468 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 FSTL1Q12841 308 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 MRPL49Q13405 166 aaKnown RBP5.14□□□□□ -1.59
VPS13A-213ENST00000539950 BROXQ5VW32 411 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 LAIR1Q6GTX8 287 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 LMBR1LQ6UX01 489 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 FKBP9P1Q75LS8 142 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 SLC41A1Q8IVJ1 513 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 OR2W6PQ8NHA6 318 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 CPT1CQ8TCG5 803 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 LENG9Q96B70 501 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 MFSD3Q96ES6 412 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 IL17RAQ96F46 866 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 LSM14BQ9BX40 385 aaKnown RBP5.14□□□□□ -1.59
VPS13A-213ENST00000539950 EMC7Q9NPA0 242 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 EVLQ9UI08 416 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-213ENST00000539950 PLAAQ9Y263 795 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 NUMBLQ9Y6R0 609 aa5.14□□□□□ -1.59
VPS13A-213ENST00000539950 GSG1L2A8MUP6 293 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 KDM1AO60341 852 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 DNAJC6O75061 913 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 SCAF4O95104 1147 aaKnown RBP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 CLEC2LP0C7M8 214 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 XPAP23025 273 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 GZMKP49863 264 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 COL10A1Q03692 680 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 DUSP2Q05923 314 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 TRIM25Q14258 630 aaKnown RBP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 UBE3CQ15386 1083 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 FRMD7Q6ZUT3 714 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 KIAA0907Q7Z7F0 614 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 NPM2Q86SE8 214 aaKnown RBP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 XYLT1Q86Y38 959 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms