RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PHLPP1O60346 1717 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 FOXO6A8MYZ6 492 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 ZBTB39O15060 712 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 GAP43P17677 238 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 CDC25CP30307 473 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 GBP1P32455 592 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 PSEN1P49768 467 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 ALDH5A1P51649 535 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 ODR4Q5SWX8 454 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 RINT1Q6NUQ1 792 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 RPUSD2Q8IZ73 545 aaKnown RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 BTBD6Q96KE9 485 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 IFT74Q96LB3 600 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 PCIF1Q9H4Z3 704 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 PARVGQ9HBI0 331 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 MYO3BQ8WXR4 1341 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 TCRBV7S2A1N4TA0A589 114 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 ANKRD63C9JTQ0 380 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 EYA4O95677 639 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 CREB1P16220 341 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 ATP2B4P23634 1241 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 PTGIRP43119 386 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 LACTBP83111 547 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-237ENST00000539504 CETN1Q12798 172 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 STXBP4Q6ZWJ1 553 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 TRMT1LQ7Z2T5 733 aaKnown RBP12.1□□□□□ -0.47
SYNE1-237ENST00000539504 FMNL3Q8IVF7 1028 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 ETNPPLQ8TBG4 499 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 MICAL1Q8TDZ2 1067 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 POP1Q99575 1024 aaKnown RBP12.1□□□□□ -0.47
SYNE1-237ENST00000539504 ZSWIM1Q9BR11 485 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 CNOT7Q9UIV1 285 aaKnown RBP12.1□□□□□ -0.47
SYNE1-237ENST00000539504 EML1O00423 815 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 MSH4O15457 936 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 ECEL1O95672 775 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 RARGP13631 454 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 STX2P32856 288 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 DRG2P55039 364 aaKnown RBP12.1□□□□□ -0.47
SYNE1-237ENST00000539504 GPC5P78333 572 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 TCP10Q12799 353 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 NSMFQ6X4W1 530 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 PTF1AQ7RTS3 328 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 EXOC3L1Q86VI1 746 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 G3V3G9 751 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 PYGMP11217 842 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 POLD1P28340 1107 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 NOVP48745 357 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 NCALDP61601 193 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 SPIRE1Q08AE8 756 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 AP3B2Q13367 1082 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 CCHCR1Q8TD31 782 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 C1orf54Q8WWF1 131 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 AMNQ9BXJ7 453 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 C15orf41Q9Y2V0 281 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 DOT1LQ8TEK3 1739 aa12.1□□□□□ -0.47
SYNE1-237ENST00000539504 GSTTP1A0A1W2PQM5 241 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 EIF4E1BA6NMX2 242 aaKnown RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 MEIS2O14770 477 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 COILP38432 576 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 GABPAQ06546 454 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 FAM98CQ17RN3 349 aaKnown RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 FBXO11Q86XK2 927 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 DYDC2Q96IM9 177 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 AFF2P51816 1311 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 A8MUI8 341 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 DLATP10515 647 aaKnown RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 EEF2P13639 858 aaKnown RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 SHMT1P34896 483 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 MMP14P50281 582 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 UBXN2AP68543 259 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 ATP11AP98196 1134 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 BMT2Q1RMZ1 405 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 PHLDB3Q6NSJ2 640 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 SPATA21Q7Z572 469 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 FAM20AQ96MK3 541 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 CDC42EP4Q9H3Q1 356 aaKnown RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 CTNNAL1Q9UBT7 734 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 CCNL1Q9UK58 526 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-237ENST00000539504 PNMA3Q9UL41 463 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 CYP3A7-CYP3A51PA0A087WV96 503 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 BRAFP15056 766 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 CYP3A7P24462 503 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 GCLMP48507 274 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 COPS2P61201 443 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 BTNL9Q6UXG8 535 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 CPNE8Q86YQ8 564 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 KCNV2Q8TDN2 545 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 NKIRAS1Q9NYS0 192 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 KLHL14Q9P2G3 628 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 TRIM33Q9UPN9 1127 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 ROBO1Q9Y6N7 1651 aa12.09□□□□□ -0.47
SYNE1-237ENST00000539504 IGKV6D-41A0A0C4DH26 115 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 THAP12O43422 761 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 SLC26A4O43511 780 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 RARAP10276 462 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 GCKP35557 465 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 PEX19P40855 299 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 SHROOM1Q2M3G4 852 aaPredicted RBP12.08□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms