RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 EFHBQ8N7U6 833 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.82□□□□□ -0.36
RTN3-209ENST00000538995 URGCPQ8TCY9 931 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 SNX29Q8TEQ0 813 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 PRIMPOLQ96LW4 560 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 BACH2Q9BYV9 841 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 C2orf40Q9H1Z8 148 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 RSAD1Q9HA92 442 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 NGRNQ9NPE2 291 aaKnown RBP12.82□□□□□ -0.36
RTN3-209ENST00000538995 ZMYM2Q9UBW7 1377 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 GRXCR2A6NFK2 248 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 H3BQ06 376 aaPredicted RBP12.81□□□□□ -0.36
RTN3-209ENST00000538995 INPPL1O15357 1258 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 OFD1O75665 1012 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 CSPG5O95196 566 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 LTBRP36941 435 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 BCAR1P56945 870 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 ADAM15Q13444 863 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 PPP2R5AQ15172 486 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 FAM187BQ17R55 369 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 LARP1BQ659C4 914 aaKnown RBP12.81□□□□□ -0.36
RTN3-209ENST00000538995 ARL6IP4Q66PJ3 421 aaKnown RBP12.81□□□□□ -0.36
RTN3-209ENST00000538995 PTCRAQ6ISU1 281 aaPredicted RBP12.81□□□□□ -0.36
RTN3-209ENST00000538995 AGMOQ6ZNB7 445 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 BRAPQ7Z569 592 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 ADGRD2Q7Z7M1 963 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 ZBTB8OSQ8IWT0 167 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 HACE1Q8IYU2 909 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 MICAL1Q8TDZ2 1067 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 LPPQ93052 612 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 CSRNP2Q9H175 543 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 GPRC5CQ9NQ84 441 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 TBC1D13Q9NVG8 400 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 PRMT7Q9NVM4 692 aaPredicted RBP12.81□□□□□ -0.36
RTN3-209ENST00000538995 KANSL3Q9P2N6 904 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 STK39Q9UEW8 545 aa12.81□□□□□ -0.36
RTN3-209ENST00000538995 ATG2AQ2TAZ0 1938 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 A0A087WWV3 80 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 LRRIQ4A6NIV6 560 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 MEIS3P2A8K0S8 358 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 ZC3H11AO75152 810 aaKnown RBP eCLIP12.8□□□□□ -0.36
RTN3-209ENST00000538995 TBX10O75333 385 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 BMP15O95972 392 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 ARF4P18085 180 aaPredicted RBP12.8□□□□□ -0.36
RTN3-209ENST00000538995 PDCP20941 246 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 NAMPTP43490 491 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 NRIP1P48552 1158 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 RNASELQ05823 741 aaKnown RBP12.8□□□□□ -0.36
RTN3-209ENST00000538995 ECM1Q16610 540 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 EP400NLQ6ZTU2 488 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 SMG8Q8ND04 991 aaKnown RBP12.8□□□□□ -0.36
RTN3-209ENST00000538995 KIFAP3Q92845 792 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 TMEM169Q96HH4 297 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 NECAB3Q96P71 396 aaPredicted RBP12.8□□□□□ -0.36
RTN3-209ENST00000538995 TCF25Q9BQ70 676 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 BHMT2Q9H2M3 363 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 TLE6Q9H808 572 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 ENTPD7Q9NQZ7 604 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 DDX19AQ9NUU7 478 aaKnown RBP12.8□□□□□ -0.36
RTN3-209ENST00000538995 KIAA1024Q9UPX6 916 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 INPP5FQ9Y2H2 1132 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 IPPQ9Y573 584 aa12.8□□□□□ -0.36
RTN3-209ENST00000538995 A0A1B0GUA9 196 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 SLC26A4O43511 780 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 EYA4O95677 639 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 ITGA4P13612 1032 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 GTF2F1P35269 517 aaKnown RBP eCLIP12.79□□□□□ -0.363e-7■■■■■ 29.2
RTN3-209ENST00000538995 PBX3P40426 434 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 NDUFV1P49821 464 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 ERVFC1P60507 584 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 SMAD4Q13485 552 aaKnown RBP12.79□□□□□ -0.36
RTN3-209ENST00000538995 BMS1Q14692 1282 aaKnown RBP12.79□□□□□ -0.36
RTN3-209ENST00000538995 IL17AQ16552 155 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 DUSP6Q16828 381 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 HYIQ5T013 277 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 SLC27A1Q6PCB7 646 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 MAEAQ7L5Y9 396 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 FAM178BQ8IXR5 827 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 CPB2Q96IY4 423 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 MSLNLQ96KJ4 702 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 IFT74Q96LB3 600 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 TMEM175Q9BSA9 504 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 EIF2AQ9BY44 585 aaKnown RBP12.79□□□□□ -0.36
RTN3-209ENST00000538995 TRIM6Q9C030 488 aaPredicted RBP12.79□□□□□ -0.36
RTN3-209ENST00000538995 FZD8Q9H461 694 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 IGFLR1Q9H665 355 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 NRDE2Q9H7Z3 1164 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 PRKAG3Q9UGI9 489 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 CD207Q9UJ71 328 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 DNM3Q9UQ16 869 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 GIT1Q9Y2X7 761 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 PCDHGC5Q9Y5F6 944 aa12.79□□□□□ -0.36
RTN3-209ENST00000538995 LINC01565O15544 149 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 B4GALT5O43286 388 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 GALTP07902 379 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 SRGAP2BP0DMP2 458 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 IL9P15248 144 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 EFNA5P52803 228 aa12.78□□□□□ -0.36
RTN3-209ENST00000538995 DLX2Q07687 328 aaPredicted RBP12.78□□□□□ -0.36
RTN3-209ENST00000538995 COASYQ13057 564 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms