RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PNMA2Q9UL42 364 aa22.95■■□□□ 1.26
VPS28-205ENST00000526204 NFS1Q9Y697 457 aa22.95■■□□□ 1.26
VPS28-205ENST00000526204 FTLP02792 175 aaPredicted RBP22.94■■□□□ 1.26
VPS28-205ENST00000526204 GCLMP48507 274 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 ATP1A2P50993 1020 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 BIRC3Q13489 604 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 DCAF12L1Q5VU92 463 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 PALB2Q86YC2 1186 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 ARHGEF19Q8IW93 802 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 SYTL5Q8TDW5 730 aaPredicted RBP22.94■■□□□ 1.26
VPS28-205ENST00000526204 ZNF277Q9NRM2 450 aaPredicted RBP22.94■■□□□ 1.26
VPS28-205ENST00000526204 COG5Q9UP83 839 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 EXOC7Q9UPT5 735 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 ALAS1P13196 640 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 GPC5P78333 572 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 PRPF4BQ13523 1007 aaKnown RBP22.94■■□□□ 1.26
VPS28-205ENST00000526204 UAP1Q16222 522 aaPredicted RBP22.94■■□□□ 1.26
VPS28-205ENST00000526204 UBL4BQ8N7F7 174 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 NEUROG2Q9H2A3 272 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 ZNRF3Q9ULT6 936 aa22.94■■□□□ 1.26
VPS28-205ENST00000526204 TISP43B9A030 160 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 RTN2O75298 545 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 HSPA6P17066 643 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 MXI1P50539 228 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 JAK3P52333 1124 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 NCKAP1LP55160 1127 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 PSMC5P62195 406 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 SPDYCQ5MJ68 293 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 C1orf220Q5T0J3 134 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 TTC19Q6DKK2 380 aaPredicted RBP22.93■■□□□ 1.26
VPS28-205ENST00000526204 EFCAB13Q8IY85 973 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 SLC20A1Q8WUM9 679 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 KIAA1683Q9H0B3 1180 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 SLC38A10Q9HBR0 1119 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 CTTNBP2NLQ9P2B4 639 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 ALG6Q9Y672 507 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 FAM187AA6NFU0 413 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 SRRM3A6NNA2 597 aaPredicted RBP22.93■■□□□ 1.26
VPS28-205ENST00000526204 GZMAP12544 262 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 SFNP31947 248 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 DHX34Q14147 1143 aaKnown RBP22.93■■□□□ 1.26
VPS28-205ENST00000526204 SKIDA1Q1XH10 827 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 TMC3Q7Z5M5 1100 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 RPUSD2Q8IZ73 545 aaKnown RBP22.93■■□□□ 1.26
VPS28-205ENST00000526204 CPXCR1Q8N123 301 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 ZBED3Q96IU2 234 aaPredicted RBP22.93■■□□□ 1.26
VPS28-205ENST00000526204 ANKEF1Q9NU02 776 aa22.93■■□□□ 1.26
VPS28-205ENST00000526204 ASTN2O75129 1339 aaPredicted RBP22.92■■□□□ 1.26
VPS28-205ENST00000526204 SYNGAP1Q96PV0 1343 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 NDUFAB1O14561 156 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 ERLIN2O94905 339 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 LSP1P33241 339 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 DR1Q01658 176 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 POTEAQ6S8J7 498 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 MORC4Q8TE76 937 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 RPS6KC1Q96S38 1066 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 CELF4Q9BZC1 486 aaKnown RBP22.92■■□□□ 1.26
VPS28-205ENST00000526204 EPN3Q9H201 632 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 MYH11P35749 1972 aa22.92■■□□□ 1.26
VPS28-205ENST00000526204 PHF20L1A8MW92 1017 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 MDH1P40925 334 aaKnown RBP22.91■■□□□ 1.26
VPS28-205ENST00000526204 PEX3P56589 373 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 B4GALNT4Q76KP1 1039 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 FAM71AQ8IYT1 594 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 PROCA1Q8NCQ7 364 aaPredicted RBP22.91■■□□□ 1.26
VPS28-205ENST00000526204 UBLCP1Q8WVY7 318 aaPredicted RBP22.91■■□□□ 1.26
VPS28-205ENST00000526204 HVCN1Q96D96 273 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 TMEM117Q9H0C3 514 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 RAVER2Q9HCJ3 691 aaKnown RBP22.91■■□□□ 1.26
VPS28-205ENST00000526204 GINM1Q9NU53 330 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.91■■□□□ 1.26
VPS28-205ENST00000526204 STK32BQ9NY57 414 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 TCEAL9Q9UHQ7 104 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 TNS1Q9HBL0 1735 aaKnown RBP22.91■■□□□ 1.26
VPS28-205ENST00000526204 WDR64B1ANS9 1081 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 SLC16A4O15374 487 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 SMTNP53814 917 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 MFAP3P55082 362 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 KRT76Q01546 638 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 ZNF844Q08AG5 666 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 SPP2Q13103 211 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 PGM5Q15124 567 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 SPATS2Q86XZ4 545 aaKnown RBP22.91■■□□□ 1.26
VPS28-205ENST00000526204 NIM1KQ8IY84 436 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 PPM1EQ8WY54 764 aa22.91■■□□□ 1.26
VPS28-205ENST00000526204 WNT10BO00744 389 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 BACH1O14867 736 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 MTA2O94776 668 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 VCAM1P19320 739 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 ALG3Q92685 438 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 TAAR1Q96RJ0 339 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 ERP44Q9BS26 406 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 NR2E1Q9Y466 385 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 EIF2AK2P19525 551 aaKnown RBP22.9■■□□□ 1.26
VPS28-205ENST00000526204 DRG2P55039 364 aaKnown RBP22.9■■□□□ 1.26
VPS28-205ENST00000526204 RPS6P62753 249 aaKnown RBP22.9■■□□□ 1.26
VPS28-205ENST00000526204 DHX9Q08211 1270 aaKnown RBP22.9■■□□□ 1.26
VPS28-205ENST00000526204 AGBL2Q5U5Z8 902 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 NAA35Q5VZE5 725 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 DUPD1Q68J44 220 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms