RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PPP3CAQ08209 521 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 FAM102BQ5T8I3 360 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 MAATS1Q7Z4T9 603 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 APOBEC3FQ8IUX4 373 aaKnown RBP16.08■□□□□ 0.16
NUP54-217ENST00000514987 MAP4K3Q8IVH8 894 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 MICALL2Q8IY33 904 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 MCPH1Q8NEM0 835 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 MORC4Q8TE76 937 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 FAM81BQ96LP2 452 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 ISCUQ9H1K1 167 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 GOLGA6AQ9NYA3 693 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 ADAMTS5Q9UNA0 930 aa16.08■□□□□ 0.16
NUP54-217ENST00000514987 KRIT1O00522 736 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 ATP2A1O14983 1001 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 RAD51CO43502 376 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 BUB1BO60566 1050 aaPredicted RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 ATP9AO75110 1047 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 CCNE2O96020 404 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 PSAPP07602 524 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 NR3C2P08235 984 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 CARSP49589 748 aaKnown RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 GMPSP49915 693 aaPredicted RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 MFAP3P55082 362 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 HNRNPH2P55795 449 aaKnown RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 BAATQ14032 418 aaPredicted RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 UGCGQ16739 394 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 CFAP58Q5T655 872 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 C1orf131Q8NDD1 294 aaKnown RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 TMEM161BQ8NDZ6 487 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 IFT81Q8WYA0 676 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 ATG4CQ96DT6 458 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 CARD9Q9H257 536 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 KMT5AQ9NQR1 393 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 RGS17Q9UGC6 210 aaPredicted RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 CNOT7Q9UIV1 285 aaKnown RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 NFU1Q9UMS0 254 aa16.07■□□□□ 0.16
NUP54-217ENST00000514987 NOC2LQ9Y3T9 749 aaKnown RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 BRCA1P38398 1863 aaKnown RBP16.07■□□□□ 0.16
NUP54-217ENST00000514987 MYPNQ86TC9 1320 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 PHIPQ8WWQ0 1821 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 CCDC169A6NNP5 214 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 MIF4GDA9UHW6 222 aaKnown RBP16.06■□□□□ 0.16
NUP54-217ENST00000514987 BHMG1C9JSJ3 638 aaPredicted RBP16.06■□□□□ 0.16
NUP54-217ENST00000514987 NFKBIEO00221 500 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 RTN2O75298 545 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 GZMAP12544 262 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 DSG3P32926 999 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 GCLMP48507 274 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 DLG4P78352 724 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 C1orf220Q5T0J3 134 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 C11orf63Q6NUN7 778 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 CD302Q8IX05 232 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 KLHL7Q8IXQ5 586 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 REPS2Q8NFH8 660 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 CASKIN2Q8WXE0 1202 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 COQ4Q9Y3A0 265 aa16.06■□□□□ 0.16
NUP54-217ENST00000514987 DGAT1O75907 488 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 HSPA6P17066 643 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 PTPRAP18433 802 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 NPTX2P47972 431 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 GPC5P78333 572 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 SNRNP35Q16560 246 aaKnown RBP16.05■□□□□ 0.16
NUP54-217ENST00000514987 GNPTABQ3T906 1256 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 NBPF12Q5TAG4 269 aaPredicted RBP16.05■□□□□ 0.16
NUP54-217ENST00000514987 KRT39Q6A163 491 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 FAM71AQ8IYT1 594 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 LRRC45Q96CN5 670 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 TMEM117Q9H0C3 514 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 TMEM8AQ9HCN3 771 aa16.05■□□□□ 0.16
NUP54-217ENST00000514987 SEPT11Q9NVA2 429 aaKnown RBP16.05■□□□□ 0.16
NUP54-217ENST00000514987 GOLGA6L10A0A0M3HER8 536 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 FZD9O00144 591 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 SART1O43290 800 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 MTA2O94776 668 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 ABCB4P21439 1286 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 GARTP22102 1010 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 CNGA1P29973 690 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 HSPA9P38646 679 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 GPC3P51654 580 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 RNASE9P60153 205 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 MRPS25P82663 173 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 BRDTQ58F21 947 aaPredicted RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 SNRNP48Q6IEG0 339 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 ANO5Q75V66 913 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 ENOSF1Q7L5Y1 443 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 ARHGEF19Q8IW93 802 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 IQCKQ8N0W5 287 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 CEP170P1Q96L14 293 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 MFSD14AQ96MC6 490 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 FBXL18Q96ME1 805 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 KIAA1586Q9HCI6 787 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 TMOD4Q9NZQ9 345 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 PPP2R3BQ9Y5P8 575 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 DENND3A2RUS2 1198 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 KIAA0391O15091 583 aaKnown RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 SHOX2O60902 331 aaPredicted RBP16.04■□□□□ 0.16
NUP54-217ENST00000514987 ZC3H11AO75152 810 aaKnown RBP eCLIP16.04■□□□□ 0.162e-6■■■■□ 20.6
NUP54-217ENST00000514987 LRRN2O75325 713 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 EGFRP00533 1210 aa16.04■□□□□ 0.16
NUP54-217ENST00000514987 FTLP02792 175 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms