RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ZNF131P52739 623 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 RBM26Q5T8P6 1007 aaKnown RBP10.38□□□□□ -0.75
VCAN-210ENST00000513960 MOXD1Q6UVY6 613 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 PPP4R3CPQ6ZMV5 832 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 ARHGAP27Q6ZUM4 889 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 COL23A1Q86Y22 540 aaPredicted RBP10.38□□□□□ -0.75
VCAN-210ENST00000513960 SLITRK6Q9H5Y7 841 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 NAGPAQ9UK23 515 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 PCDHAC2Q9Y5I4 1007 aa10.38□□□□□ -0.75
VCAN-210ENST00000513960 CYP3A7-CYP3A51PA0A087WV96 503 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 CYP3A7P24462 503 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 GJC1P36383 396 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 STAT1P42224 750 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 MSH2P43246 934 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 MESDQ14696 234 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SHROOM1Q2M3G4 852 aaPredicted RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 ANKRD20A2Q5SQ80 823 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 ANKRD20A1Q5TYW2 823 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SYDE2Q5VT97 1194 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 ANKRD20A3Q5VUR7 823 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SEPT14Q6ZU15 432 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SCFD1Q8WVM8 642 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 GCNT4Q9P109 453 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 STK24Q9Y6E0 443 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 PITPNM2Q9BZ72 1349 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 H0YGN5 161 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 MEIS2O14770 477 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 KIF3CO14782 793 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SPOPO43791 374 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 LUC7L3O95232 432 aaKnown RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 BMP3P12645 472 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 CCND1P24385 295 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 KCNJ1P48048 391 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 GALCP54803 685 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 RNASELQ05823 741 aaKnown RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 LACTB2Q53H82 288 aaPredicted RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 C6orf118Q5T5N4 469 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SEL1L2Q5TEA6 688 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 CATSPER3Q86XQ3 398 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 C18orf8Q96DM3 657 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 IDI2Q9BXS1 227 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 FAM198AQ9UFP1 575 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 NFS1Q9Y697 457 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 TMEM120BA0PK00 339 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 TBX3O15119 743 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 ECE2O60344 883 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 TBCAO75347 108 aaKnown RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 LCA5LO95447 670 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 NDUFB10O96000 172 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 COPS2P61201 443 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SEPT7Q16181 437 aaKnown RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 ARMC3Q5W041 872 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 SLC30A9Q6PML9 568 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 JAMLQ86YT9 394 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 TRIM59Q8IWR1 403 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 ZNF570Q96NI8 536 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 NAP1L3Q99457 506 aaPredicted RBP10.37□□□□□ -0.75
VCAN-210ENST00000513960 MRIQ9BWK5 157 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 FGFBP2Q9BYJ0 223 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 INTUQ9ULD6 942 aa10.37□□□□□ -0.75
VCAN-210ENST00000513960 H0YIN7 160 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 AFPP02771 609 aaKnown RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 GNAT1P11488 350 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 UCHL3P15374 230 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 NCALDP61601 193 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 CYP4A11Q02928 519 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 ADCY2Q08462 1091 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 TSNAXIP1Q2TAA8 658 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 KIAA1755Q5JYT7 1200 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 SPATA21Q7Z572 469 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 SRRM1Q8IYB3 904 aaKnown RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 ZNF483Q8TF39 744 aaPredicted RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 FAM20AQ96MK3 541 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 C10orf71Q711Q0 1435 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 NOL4O94818 638 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 GCNT3O95395 438 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 GH2P01242 217 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 RPA1P27694 616 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 ASTE1Q2TB18 679 aaPredicted RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 EDRF1Q3B7T1 1238 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 EGFL6Q8IUX8 553 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 FLAD1Q8NFF5 587 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 ACTRT1Q8TDG2 376 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 SCFD2Q8WU76 684 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 SYN2Q92777 582 aaPredicted RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 TGS1Q96RS0 853 aaKnown RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 ERP44Q9BS26 406 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 TRIM4Q9C037 500 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 TDRD3Q9H7E2 651 aaKnown RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 ARHGEF10LQ9HCE6 1279 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 CALUO43852 315 aaPredicted RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 ECHS1P30084 290 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 HOXA13P31271 388 aaPredicted RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 TLDC1Q6P9B6 456 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.36□□□□□ -0.75
VCAN-210ENST00000513960 TMEM237Q96Q45 408 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 PABPC3Q9H361 631 aaKnown RBP10.36□□□□□ -0.75
VCAN-210ENST00000513960 ZFATQ9P243 1243 aa10.36□□□□□ -0.75
VCAN-210ENST00000513960 SFI1A8K8P3 1242 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 BRAFP15056 766 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms