RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, human

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-208	ENST00000508604	UNC5B	Q8IZJ1	945 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	IL17RA	Q96F46	866 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	SRPK1	Q96SB4	655 aa	Known RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	DNAJC7	Q99615	494 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	WDR11	Q9BZH6	1224 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	ZNF768	Q9H5H4	540 aa	Known RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	NCOA5	Q9HCD5	579 aa	Known RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	ING3	Q9NXR8	418 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	SNTG2	Q9NY99	539 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	ANKFY1	Q9P2R3	1169 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	INSL6	Q9Y581	213 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	COX11	Q9Y6N1	276 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	PRR5-ARHGAP8	B1AHC4	643 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	PLD2	O14939	933 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	OPHN1	O60890	802 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	GAA	P10253	952 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	ZNF37A	P17032	561 aa	Predicted RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	PTX3	P26022	381 aa	Predicted RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	MXRA7	P84157	204 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	NAALADL2	Q58DX5	795 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	KANSL1	Q7Z3B3	1105 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	GDF7	Q7Z4P5	450 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	ARHGEF19	Q8IW93	802 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	CMTR2	Q8IYT2	770 aa	Known RBP	4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	OR52N2	Q8NGI0	321 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	SYNPO2L	Q9H987	977 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	RSAD1	Q9HA92	442 aa		4.38	□□□□□ -1.71
NUP54-208	ENST00000508604	ST20-MTHFS	A0A0A6YYL1	179 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	TMEM200C	A6NKL6	621 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	DIRC3	C9JPN6	131 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	ASL	P04424	464 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	HLA-DOA	P06340	250 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	SPATA31D3	P0C874	917 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	HKR1	P10072	659 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	XPA	P23025	273 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	APOBEC3A	P31941	199 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	SPATA31D4	Q6ZUB0	917 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	DOK3	Q7L591	496 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	PLXDC1	Q8IUK5	500 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	HOMEZ	Q8IX15	550 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	NTN5	Q8WTR8	489 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	COQ10A	Q96MF6	247 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	MYL10	Q9BUA6	226 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	AKIP1	Q9NQ31	210 aa		4.37	□□□□□ -1.71
NUP54-208	ENST00000508604	FAM221B	A6H8Z2	402 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	AHRR	A9YTQ3	701 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	LPXN	O60711	386 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	NDUFA10	O95299	355 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	SLC9A1	P19634	815 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	CASR	P41180	1078 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	GZMK	P49863	264 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	BLOC1S1	P78537	153 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	GUCY1B3	Q02153	619 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	DUSP2	Q05923	314 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	MRPL49	Q13405	166 aa	Known RBP	4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	CCDC62	Q6P9F0	684 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	ENKD1	Q9H0I2	346 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	SPON1	Q9HCB6	807 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	TOMM22	Q9NS69	142 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	B4GALT6	Q9UBX8	382 aa		4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	CCDC9	Q9Y3X0	531 aa	Known RBP	4.36	□□□□□ -1.71
NUP54-208	ENST00000508604	NCR1	O76036	304 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	BMPR1A	P36894	532 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	ELL	P55199	621 aa	Predicted RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	SERINC3	Q13530	473 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	FNDC3B	Q53EP0	1204 aa	Known RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	C2orf27A	Q580R0	203 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	PIK3R6	Q5UE93	754 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	FBXO42	Q6P3S6	717 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	PASD1	Q8IV76	773 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	LILRA3	Q8N6C8	439 aa	Predicted RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	CDYL2	Q8N8U2	506 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	ZNF428	Q96B54	188 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	ELF4	Q99607	663 aa	Predicted RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	POFUT1	Q9H488	388 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	ZKSCAN5	Q9Y2L8	839 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	PCDHB6	Q9Y5E3	794 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	SPO11	Q9Y5K1	396 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	NRP2	O60462	931 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	PCDH8	O95206	1070 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	CD40	P25942	277 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	MGAT1	P26572	445 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	ZFP36	P26651	326 aa	Known RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	CXCR5	P32302	372 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	NRG3	P56975	720 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	SOGA3	Q5TF21	947 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	JMY	Q8N9B5	988 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	SLC9A6	Q92581	669 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	FERMT2	Q96AC1	680 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	ARMC5	Q96C12	935 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	CPEB1	Q9BZB8	566 aa	Known RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	USP36	Q9P275	1121 aa	Known RBP	4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	PTCH2	Q9Y6C5	1203 aa		4.35	□□□□□ -1.71
NUP54-208	ENST00000508604	MYPN	Q86TC9	1320 aa		4.34	□□□□□ -1.71
NUP54-208	ENST00000508604	RAPGEF3	O95398	923 aa		4.34	□□□□□ -1.71
NUP54-208	ENST00000508604	C1R	P00736	705 aa		4.34	□□□□□ -1.71
NUP54-208	ENST00000508604	CLK3	P49761	638 aa	Known RBP	4.34	□□□□□ -1.71

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