RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SMAD2Q15796 467 aaKnown RBP20■□□□□ 0.79
SQSTM1-209ENST00000504627 GLB1LQ6UWU2 654 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 TMC7Q7Z402 723 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 ADHFE1Q8IWW8 467 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 KHSRPQ92945 711 aaKnown RBP eCLIP20■□□□□ 0.79
SQSTM1-209ENST00000504627 PGBD4Q96DM1 585 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 CHAMP1Q96JM3 812 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 MTMR9Q96QG7 549 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 CDCA3Q99618 268 aaPredicted RBP20■□□□□ 0.79
SQSTM1-209ENST00000504627 ANKEF1Q9NU02 776 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 AGPAT5Q9NUQ2 364 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 INPP5FQ9Y2H2 1132 aa20■□□□□ 0.79
SQSTM1-209ENST00000504627 POTEMA6NI47 508 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 FSCN2O14926 492 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 DGAT1O75907 488 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 ERLIN2O94905 339 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 LYPLA2O95372 231 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 RNASELQ05823 741 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 TFDP1Q14186 410 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 MXD4Q14582 209 aaPredicted RBP19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 USP28Q96RU2 1077 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 TMEM60Q9H2L4 133 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 NGRNQ9NPE2 291 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 CLEC1BQ9P126 229 aa19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 BARX2Q9UMQ3 279 aaPredicted RBP19.99■□□□□ 0.79
SQSTM1-209ENST00000504627 NT5C1B-RDH14C9J2C7 533 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 PI4K2BG5E9Z4 385 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 ZNF623O75123 536 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 ZC3H11AO75152 810 aaKnown RBP eCLIP19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 YEATS4O95619 227 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 SRGAP2BP0DMP2 458 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 CA8P35219 290 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 NASPP49321 788 aaPredicted RBP19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 BCAR1P56945 870 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 ZP2Q05996 745 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 NCBP1Q09161 790 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 DUSP6Q16828 381 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 SLC39A11Q8N1S5 342 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 PIGOQ8TEQ8 1089 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 TMEM169Q96HH4 297 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 MSLNLQ96KJ4 702 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 POP1Q99575 1024 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 MINDY3Q9H8M7 445 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 XPNPEP1Q9NQW7 623 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 PCDHB2Q9Y5E7 798 aa19.98■□□□□ 0.79
SQSTM1-209ENST00000504627 GLP2RO95838 553 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 ALADP13716 330 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 TECP42680 631 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 BMS1Q14692 1282 aaKnown RBP19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 ZNF174Q15697 407 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 NOMO2Q5JPE7 1267 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 TMEM31Q5JXX7 168 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 URGCPQ8TCY9 931 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 LEO1Q8WVC0 666 aaPredicted RBP19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 GBP3Q9H0R5 595 aa19.97■□□□□ 0.79
SQSTM1-209ENST00000504627 A0A087WWV3 80 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 CARNS1A5YM72 827 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 MEIS3P2A8K0S8 358 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 INO80B-WBP1J3KQ70 363 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 OFD1O75665 1012 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 EYA4O95677 639 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 BMP15O95972 392 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 RARRES1P49788 294 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 COASYQ13057 564 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 ORC2Q13416 577 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 PCBP1Q15365 356 aaKnown RBP eCLIP19.96■□□□□ 0.791e-6■□□□□ 8.3
SQSTM1-209ENST00000504627 SMRP1Q8NCR6 262 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 ERMNQ8TAM6 284 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 SPATA32Q96LK8 384 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 TBC1D13Q9NVG8 400 aa19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 MORC2Q9Y6X9 1032 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-209ENST00000504627 HIDE1A8MVS5 230 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 USO1O60763 962 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 OR52Z1P0C646 297 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 XRCC6P12956 609 aaKnown RBP eCLIP19.95■□□□□ 0.781e-5■■■□□ 14.9
SQSTM1-209ENST00000504627 AXLP30530 894 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 HOXA11P31270 313 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 TOB1P50616 345 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 PTENP60484 403 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 SMC1AQ14683 1233 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 TTC38Q5R3I4 469 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 LLGL2Q6P1M3 1020 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 KCNG4Q8TDN1 519 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 LRFN3Q9BTN0 628 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 NRDE2Q9H7Z3 1164 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 RSAD1Q9HA92 442 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 GDPD2Q9HCC8 539 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 TUFT1Q9NNX1 390 aa19.95■□□□□ 0.78
SQSTM1-209ENST00000504627 FAM86C2PA6NEL3 165 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 C19orf67A6NJJ6 358 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 ARL2P36404 184 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 RBM10P98175 930 aaKnown RBP19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 POU5F1BQ06416 359 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 STK38Q15208 465 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 NOTUMQ6P988 496 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 MAEAQ7L5Y9 396 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 MRPL10Q7Z7H8 261 aaKnown RBP19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 CATSPER3Q86XQ3 398 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 CNNM3Q8NE01 707 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 ASAP3Q8TDY4 903 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms