RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 NSMFQ6X4W1 530 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 DAAM2Q86T65 1068 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 VSIG10LQ86VR7 867 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 KSR1Q8IVT5 923 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 MREGQ8N565 214 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 LNX1Q8TBB1 728 aaPredicted RBP12.98□□□□□ -0.33
NUP54-202ENST00000502850 NSUN6Q8TEA1 469 aaKnown RBP12.98□□□□□ -0.33
NUP54-202ENST00000502850 MS4A14Q96JA4 679 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 ZFP91Q96JP5 570 aaPredicted RBP12.98□□□□□ -0.33
NUP54-202ENST00000502850 SYT11Q9BT88 431 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 BCAS3Q9H6U6 928 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 GPRC5DQ9NZD1 345 aa12.98□□□□□ -0.33
NUP54-202ENST00000502850 TTC7AQ9ULT0 858 aaPredicted RBP12.98□□□□□ -0.33
NUP54-202ENST00000502850 RLFQ13129 1914 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 TMEM88BA6NKF7 163 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 A6NNZ2 444 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 TMCO5BA8MYB1 307 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 BACH1O14867 736 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 IVLP07476 585 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 PSAPP07602 524 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 MYBL2P10244 700 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 GTF2H1P32780 548 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 GMPSP49915 693 aaPredicted RBP12.97□□□□□ -0.33
NUP54-202ENST00000502850 GNPTABQ3T906 1256 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 TUBB8Q3ZCM7 444 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 EPC2Q52LR7 807 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 GJB7Q6PEY0 223 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 USP50Q70EL3 339 aaPredicted RBP12.97□□□□□ -0.33
NUP54-202ENST00000502850 MAP4K3Q8IVH8 894 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 RASGEF1CQ8N431 466 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 KRT12Q99456 494 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 GPR88Q9GZN0 384 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 SLITRK6Q9H5Y7 841 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 FAM204AQ9H8W3 233 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 STXBP5LQ9Y2K9 1186 aa12.97□□□□□ -0.33
NUP54-202ENST00000502850 ERICH4A6NGS2 130 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 CEP104O60308 925 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 SYF2O95926 243 aaKnown RBP12.96□□□□□ -0.33
NUP54-202ENST00000502850 DSG3P32926 999 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 DNA2P51530 1060 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 PEX3P56589 373 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 SPP2Q13103 211 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 PLS1Q14651 629 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 FAM102BQ5T8I3 360 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 MAEAQ7L5Y9 396 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 GLYCTKQ8IVS8 523 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 GSPT2Q8IYD1 628 aaKnown RBP12.96□□□□□ -0.33
NUP54-202ENST00000502850 CCDC26Q8TAB7 109 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 LMO3Q8TAP4 145 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 MORC4Q8TE76 937 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 SCFD2Q8WU76 684 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 HDAC7Q8WUI4 952 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 ATG4CQ96DT6 458 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 HES6Q96HZ4 224 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 AGPAT1Q99943 283 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 TEX13BQ9BXU2 312 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 CARD9Q9H257 536 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 EHD2Q9NZN4 543 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 TMOD4Q9NZQ9 345 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 CNOT7Q9UIV1 285 aaKnown RBP12.96□□□□□ -0.33
NUP54-202ENST00000502850 TBX20Q9UMR3 447 aa12.96□□□□□ -0.33
NUP54-202ENST00000502850 NOC2LQ9Y3T9 749 aaKnown RBP12.96□□□□□ -0.33
NUP54-202ENST00000502850 KIAA1217Q5T5P2 1943 aa12.96□□□□□ -0.34
NUP54-202ENST00000502850 GOLGA6L10A0A0M3HER8 536 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 MIF4GDA9UHW6 222 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 KIAA0391O15091 583 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 RPS6KA5O75582 802 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 DGAT1O75907 488 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 NR3C2P08235 984 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 CAPN2P17655 700 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ACTN2P35609 894 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 GGCXP38435 758 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 MFAP3P55082 362 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 SLC7A5Q01650 507 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 GUCY2DQ02846 1103 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ARHGAP44Q17R89 818 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 KRT39Q6A163 491 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 SNRNP48Q6IEG0 339 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 C11orf63Q6NUN7 778 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 MAATS1Q7Z4T9 603 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 NT5DC3Q86UY8 548 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 REPS2Q8NFH8 660 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 FAM76AQ8TAV0 307 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 TMC2Q8TDI7 906 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 CBWD1Q9BRT8 395 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 NTPCRQ9BSD7 190 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 IKZF4Q9H2S9 585 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ACAD9Q9H845 621 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 UBE2TQ9NPD8 197 aaPredicted RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 KMT5AQ9NQR1 393 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ADARB2Q9NS39 739 aaKnown RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 SMARCAL1Q9NZC9 954 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 ADAMTS5Q9UNA0 930 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 PACSIN2Q9UNF0 486 aaPredicted RBP12.95□□□□□ -0.34
NUP54-202ENST00000502850 TRPM7Q96QT4 1865 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 IGSF9BQ9UPX0 1349 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 GOLGA6CA6NDK9 693 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 CCDC169A6NNP5 214 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 SLC16A4O15374 487 aa12.95□□□□□ -0.34
NUP54-202ENST00000502850 CCNE2O96020 404 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms