RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ZNF623O75123 536 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 PLCG1P19174 1290 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 NCLP19338 710 aaKnown RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 GUCY2CP25092 1073 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 GATMP50440 423 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 DNM1Q05193 864 aaKnown RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 PRPF4BQ13523 1007 aaKnown RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 KARSQ15046 597 aaKnown RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 SKIV2LQ15477 1246 aaKnown RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 CCDC85BQ15834 202 aaPredicted RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 SLC27A1Q6PCB7 646 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 SPRED2Q7Z698 418 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 HELQQ8TDG4 1101 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 P2RX5Q93086 422 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 LARSQ9P2J5 1176 aaKnown RBP18.07■□□□□ 0.48
SF3A1-209ENST00000496189 MTCH2Q9Y6C9 303 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 CHD9Q3L8U1 2897 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 MYO9BQ13459 2157 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 K7ERI5 159 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 N4BP3O15049 544 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 PRKCBP05771 671 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 ITGA4P13612 1032 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 DDIT3P35638 169 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 PPM1AP35813 382 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 PEX3P56589 373 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 RNASELQ05823 741 aaKnown RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 DHX8Q14562 1220 aaKnown RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 TIGD5Q53EQ6 642 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 PPP4R3CPQ6ZMV5 832 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 C1orf186Q6ZWK4 172 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 KCNK18Q7Z418 384 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 ZNF598Q86UK7 904 aaKnown RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 THNSL1Q8IYQ7 743 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 SLC17A8Q8NDX2 589 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 LARP4BQ92615 738 aaKnown RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 CPB2Q96IY4 423 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 RUSC1Q9BVN2 902 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 LMAN2LQ9H0V9 348 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 KMT5AQ9NQR1 393 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 TYW1Q9NV66 732 aaKnown RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 STK17AQ9UEE5 414 aa18.06■□□□□ 0.48
SF3A1-209ENST00000496189 RBM19Q9Y4C8 960 aaKnown RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 COL4A4P53420 1690 aaPredicted RBP18.06■□□□□ 0.48
SF3A1-209ENST00000496189 H0YCG3 227 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 CUTAO60888 179 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 TBCAO75347 108 aaKnown RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 ARF4P18085 180 aaPredicted RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 HOXA11P31270 313 aaPredicted RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 ME1P48163 572 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 GRIN1Q05586 938 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 RAD51AP2Q09MP3 1159 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 FAM187BQ17R55 369 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 LONRF3Q496Y0 759 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 RRAGBQ5VZM2 374 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 CCDC73Q6ZRK6 1079 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 GPBP1Q86WP2 473 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 BSNDQ8WZ55 320 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 RAD54LQ92698 747 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 SYMPKQ92797 1274 aaKnown RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 PPP2R3CQ969Q6 453 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 MRPL38Q96DV4 380 aaKnown RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 CASD1Q96PB1 797 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 FAM193BQ96PV7 902 aaPredicted RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 SCAND2PQ9GZW5 306 aaPredicted RBP18.05■□□□□ 0.48
SF3A1-209ENST00000496189 RSAD1Q9HA92 442 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 KANSL3Q9P2N6 904 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 RCOR1Q9UKL0 485 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 ODF2LQ9ULJ1 636 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 INPP5FQ9Y2H2 1132 aa18.05■□□□□ 0.48
SF3A1-209ENST00000496189 MYH15Q9Y2K3 1946 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 ACKR2O00590 384 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 LPXNO60711 386 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 SLC12A3P55017 1021 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 STRN3Q13033 797 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 NOMO2Q5JPE7 1267 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 CLLU1OSQ5K130 101 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 SPECC1Q5M775 1068 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 LPPQ93052 612 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 EPSTI1Q96J88 318 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 SPATA32Q96LK8 384 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 ZNF558Q96NG5 402 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 CLIC6Q96NY7 704 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 FZD8Q9H461 694 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 POLD4Q9HCU8 107 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 PUF60Q9UHX1 559 aaKnown RBP18.04■□□□□ 0.48
SF3A1-209ENST00000496189 CDH23Q9H251 3354 aa18.04■□□□□ 0.48
SF3A1-209ENST00000496189 FNDC1Q4ZHG4 1894 aaPredicted RBP18.03■□□□□ 0.48
SF3A1-209ENST00000496189 A0A1B0GUA9 196 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 B4GALT5O43286 388 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 FAM13AO94988 1023 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 NPTXRO95502 500 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 PLS3P13797 630 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 ATF7P17544 494 aaPredicted RBP18.03■□□□□ 0.48
SF3A1-209ENST00000496189 SCP2P22307 547 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 STAT6P42226 847 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 NPTX2P47972 431 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 ALDH7A1P49419 539 aaKnown RBP18.03■□□□□ 0.48
SF3A1-209ENST00000496189 KRT17Q04695 432 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 MCM6Q14566 821 aa18.03■□□□□ 0.48
SF3A1-209ENST00000496189 AMHR2Q16671 573 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms