RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	SCARF2	Q96GP6	870 aa	Predicted RBP	8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	NDFIP2	Q9NV92	336 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	PCDHB7	Q9Y5E2	793 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	PCDHA10	Q9Y5I2	948 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	CYP46A1	Q9Y6A2	500 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	CUL9	Q8IWT3	2517 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	ADGRA3	Q8IWK6	1321 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	SCN5A	Q14524	2016 aa		8.53	□□□□□ -1.04
RBM39-238	ENST00000493853	KIAA1217	Q5T5P2	1943 aa		8.52	□□□□□ -1.04
RBM39-238	ENST00000493853	BAZ2B	Q9UIF8	2168 aa	Known RBP	8.52	□□□□□ -1.04
RBM39-238	ENST00000493853	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	GPR182	O15218	404 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CSPG5	O95196	566 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CCNE2	O96020	404 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	TMOD1	P28289	359 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CTBS	Q01459	385 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	SSRP1	Q08945	709 aa	Known RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	TMEM266	Q2M3C6	531 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	LEXM	Q3ZCV2	418 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	SPOUT1	Q5T280	376 aa	Known RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	ZNF746	Q6NUN9	644 aa	Predicted RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	FAM43B	Q6ZT52	329 aa	Predicted RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	RUFY3	Q7L099	469 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	NPAS4	Q8IUM7	802 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CCDC60	Q8IWA6	550 aa	Predicted RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	SMAP1	Q8IYB5	467 aa	Predicted RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	FBXL16	Q8N461	479 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	ZDHHC1	Q8WTX9	485 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	KCNB2	Q92953	911 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	PLVAP	Q9BX97	442 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	RNF26	Q9BY78	433 aa	Predicted RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	C22orf23	Q9BZE7	217 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	LMAN2L	Q9H0V9	348 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	NSUN3	Q9H649	340 aa	Known RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	AGO3	Q9H9G7	860 aa	Known RBP	8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	NRBP2	Q9NSY0	501 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CLDND1	Q9NY35	253 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CEP131	Q9UPN4	1083 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	MYH6	P13533	1939 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	IGSF9B	Q9UPX0	1349 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	CHD7	Q9P2D1	2997 aa		8.52	□□□□□ -1.05
RBM39-238	ENST00000493853	COL1A2	P08123	1366 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	IGLV3-22	A0A075B6J6	115 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	IGKV6D-21	A0A0A0MT36	114 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	SERTM1	A2A2V5	107 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	SFI1	A8K8P3	1242 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	C5orf67	F2Z3F1	127 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853		H3BQ06	376 aa	Predicted RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	KHNYN	O15037	678 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	DHX15	O43143	795 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	DGKI	O75912	1065 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	IFNAR1	P17181	557 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	PDIA3	P30101	505 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	USP11	P51784	963 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	PKN1	Q16512	942 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	PAN2	Q504Q3	1202 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	TCEAL5	Q5H9L2	206 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	RTN4RL1	Q86UN2	441 aa	Predicted RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	KIAA0319L	Q8IZA0	1049 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	SIX5	Q8N196	739 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	RASGRP4	Q8TDF6	673 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	MICAL1	Q8TDZ2	1067 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	ZNF689	Q96CS4	500 aa	Predicted RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	PABPC5	Q96DU9	382 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	FAM167A	Q96KS9	214 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	SCLT1	Q96NL6	688 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	MAP7D2	Q96T17	732 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	PPP1R16B	Q96T49	567 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	ADAM2	Q99965	735 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	IGFLR1	Q9H665	355 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	NCOA5	Q9HCD5	579 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	NEUROD4	Q9HD90	331 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	ALG13	Q9NP73	1137 aa	Known RBP	8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	SH3GLB2	Q9NR46	395 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	VPS54	Q9P1Q0	977 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	GABBR1	Q9UBS5	961 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	AKT3	Q9Y243	479 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	KDM3A	Q9Y4C1	1321 aa		8.51	□□□□□ -1.05
RBM39-238	ENST00000493853	TET1	Q8NFU7	2136 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	DCDC2B	A2VCK2	349 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	WDR64	B1ANS9	1081 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	GRM6	O15303	877 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	MAGEB2	O15479	319 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	OIP5	O43482	229 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	EPB41L2	O43491	1005 aa	Known RBP	8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	CHMP2A	O43633	222 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	GAS7	O60861	476 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	DEXI	O95424	95 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	VTN	P04004	478 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	ZSCAN20	P17040	1043 aa	Predicted RBP	8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	CIITA	P33076	1130 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	IRS1	P35568	1242 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	SARS	P49591	514 aa	Known RBP	8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	CRYBB1	P53674	252 aa	Predicted RBP	8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	STK3	Q13188	491 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	NTRK3	Q16288	839 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	KIZ	Q2M2Z5	673 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	NAALADL2	Q58DX5	795 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	TMEM31	Q5JXX7	168 aa		8.5	□□□□□ -1.05
RBM39-238	ENST00000493853	LRCH2	Q5VUJ6	765 aa		8.5	□□□□□ -1.05

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