RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 PARP2Q9UGN5 583 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 ALG6Q9Y672 507 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 SIGLEC16A6NMB1 481 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 CETPP11597 493 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 GSTT1P30711 240 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 FXR2P51116 673 aaKnown RBP eCLIP12.56□□□□□ -0.47e-6■■□□□ 13.4
HDAC4-210ENST00000493582 CASP5P51878 434 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 ACVR2BQ13705 512 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 FOXR2Q6PJQ5 311 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 BICD1Q96G01 975 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 RUNDC3BQ96NL0 473 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 DCLRE1BQ9H816 532 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 SIX2Q9NPC8 291 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 BMP2KQ9NSY1 1161 aaPredicted RBP12.56□□□□□ -0.4
HDAC4-210ENST00000493582 USP40Q9NVE5 1235 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 CHCHD3Q9NX63 227 aaKnown RBP12.56□□□□□ -0.4
HDAC4-210ENST00000493582 INTUQ9ULD6 942 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 DIS3Q9Y2L1 958 aaKnown RBP12.56□□□□□ -0.4
HDAC4-210ENST00000493582 PCDHA2Q9Y5H9 948 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 PLCH1Q4KWH8 1693 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 PCDH11YQ9BZA8 1340 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 ALS2Q96Q42 1657 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 XRCC5P13010 732 aaKnown RBP12.55□□□□□ -0.4
HDAC4-210ENST00000493582 GNA11P29992 359 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 CHKAP35790 457 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 SCNN1BP51168 640 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
HDAC4-210ENST00000493582 DGKHQ86XP1 1220 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 PALB2Q86YC2 1186 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 AAASQ9NRG9 546 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 NKIRAS1Q9NYS0 192 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 CTTNBP2NLQ9P2B4 639 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 USP20Q9Y2K6 914 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 LRCH1Q9Y2L9 728 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 EDIL3O43854 480 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 ATP5HO75947 161 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 STARD3NLO95772 234 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 WASHC2DQ5SRD0 308 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 SPTY2D1Q68D10 685 aaPredicted RBP12.55□□□□□ -0.4
HDAC4-210ENST00000493582 DSTYKQ6XUX3 929 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 ARHGEF18Q6ZSZ5 1173 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 MIGA2Q7L4E1 593 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 REXO1Q8N1G1 1221 aaKnown RBP12.55□□□□□ -0.4
HDAC4-210ENST00000493582 SLC30A5Q8TAD4 765 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 OLIG1Q8TAK6 271 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 DTX3LQ8TDB6 740 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 PWWP2AQ96N64 755 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 LRRC27Q9C0I9 530 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 GCNT4Q9P109 453 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 PCYOX1Q9UHG3 505 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 VHLP40337 213 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 STAT1P42224 750 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 YARSP54577 528 aaKnown RBP12.55□□□□□ -0.4
HDAC4-210ENST00000493582 JAM2P57087 298 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 PDIA5Q14554 519 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 RCN1Q15293 331 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 EPHA7Q15375 998 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 TMEM119Q4V9L6 283 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 HHATQ5VTY9 493 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 ATL2Q8NHH9 583 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 INPP5DQ92835 1189 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 TAOK3Q9H2K8 898 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 STOML1Q9UBI4 398 aa12.55□□□□□ -0.4
HDAC4-210ENST00000493582 FAM196BA6NMK8 535 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 MAPK13O15264 365 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 AKAP3O75969 853 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 CASP4P49662 377 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 WDR4P57081 412 aaKnown RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 CALCOCO2Q13137 446 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 CERKLQ49MI3 558 aaPredicted RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 RBM26Q5T8P6 1007 aaKnown RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 TRAPPC9Q96Q05 1148 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 NDNQ99608 321 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 PHTF1Q9UMS5 762 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 USH1CQ9Y6N9 552 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 COL18A1P39060 1754 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 CASZ1Q86V15 1759 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 PALM3A6NDB9 673 aaPredicted RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 TP73O15350 636 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 SPAG7O75391 227 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 TMEM253P0C7T8 217 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 UBTFL6P0CB48 400 aaPredicted RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 ZCCHC18P0CG32 403 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 SKIP12755 728 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 MECOMQ03112 1051 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 STRN3Q13033 797 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 ZNF568Q3ZCX4 644 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 RASIP1Q5U651 963 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 USP17L2Q6R6M4 530 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 TRMT10CQ7L0Y3 403 aaKnown RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 PRUNE1Q86TP1 453 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 CCDC65Q8IXS2 484 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 SLC44A5Q8NCS7 719 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 GRAMD1AQ96CP6 724 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 TMEM47Q9BQJ4 181 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 RAB34Q9BZG1 259 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 CRNKL1Q9BZJ0 848 aaKnown RBP12.54□□□□□ -0.4
HDAC4-210ENST00000493582 KIAA1024Q9UPX6 916 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 NAALADL1Q9UQQ1 740 aa12.54□□□□□ -0.4
HDAC4-210ENST00000493582 NIP7Q9Y221 180 aaKnown RBP eCLIP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms