RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 KCNA1Q09470 495 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 ZNF658Q5TYW1 1059 aaPredicted RBP17.31■□□□□ 0.36
HPS4-216ENST00000493455 IFNLR1Q8IU57 520 aaPredicted RBP17.31■□□□□ 0.36
HPS4-216ENST00000493455 SLC17A8Q8NDX2 589 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 ACCSQ96QU6 501 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 NTPCRQ9BSD7 190 aaKnown RBP17.31■□□□□ 0.36
HPS4-216ENST00000493455 NFKBIZQ9BYH8 718 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 CCDC113Q9H0I3 377 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 GZF1Q9H116 711 aaPredicted RBP17.31■□□□□ 0.36
HPS4-216ENST00000493455 IKZF4Q9H2S9 585 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 TMEM134Q9H6X4 195 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 TBX20Q9UMR3 447 aa17.31■□□□□ 0.36
HPS4-216ENST00000493455 TTLL13PA6NNM8 815 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 TULP1O00294 542 aaPredicted RBP17.3■□□□□ 0.36
HPS4-216ENST00000493455 HNRNPDLO14979 420 aaKnown RBP17.3■□□□□ 0.36
HPS4-216ENST00000493455 TSPAN1O60635 241 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 LIG4P49917 911 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 GTF2BQ00403 316 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 NCBP1Q09161 790 aaKnown RBP17.3■□□□□ 0.36
HPS4-216ENST00000493455 GPNMBQ14956 572 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 KLHL10Q6JEL2 608 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 SASS6Q6UVJ0 657 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 MYOCDQ8IZQ8 938 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 DBF4BQ8NFT6 615 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 SPATA20Q8TB22 786 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 NOC3LQ8WTT2 800 aaKnown RBP17.3■□□□□ 0.36
HPS4-216ENST00000493455 SEPT8Q92599 483 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 TARS2Q9BW92 718 aaKnown RBP17.3■□□□□ 0.36
HPS4-216ENST00000493455 ERVK-5Q9HDB9 667 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 ANKFY1Q9P2R3 1169 aa17.3■□□□□ 0.36
HPS4-216ENST00000493455 SYCE3A1L190 88 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 PARNO95453 639 aaKnown RBP17.29■□□□□ 0.36
HPS4-216ENST00000493455 RFC2P35250 354 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 PPIGQ13427 754 aaKnown RBP eCLIP17.29■□□□□ 0.362e-8■■□□□ 13.2
HPS4-216ENST00000493455 ALCAMQ13740 583 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 MORC3Q14149 939 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 NT5DC1Q5TFE4 455 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 ZBTB33Q86T24 672 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 USP38Q8NB14 1042 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 SCFD1Q8WVM8 642 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 MRPL4Q9BYD3 311 aaKnown RBP17.29■□□□□ 0.36
HPS4-216ENST00000493455 FZD8Q9H461 694 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 EXOC7Q9UPT5 735 aa17.29■□□□□ 0.36
HPS4-216ENST00000493455 MKI67P46013 3256 aaKnown RBP17.29■□□□□ 0.36
HPS4-216ENST00000493455 MICAL3Q7RTP6 2002 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 CNTNAP2Q9UHC6 1331 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 TISP43B9A030 160 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 ACKR2O00590 384 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 EIF3DO15371 548 aaKnown RBP eCLIP17.28■□□□□ 0.36
HPS4-216ENST00000493455 ZSCAN20P17040 1043 aaPredicted RBP17.28■□□□□ 0.36
HPS4-216ENST00000493455 ARF4P18085 180 aaPredicted RBP17.28■□□□□ 0.36
HPS4-216ENST00000493455 STIM1Q13586 685 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 AMHR2Q16671 573 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 TCTN1Q2MV58 587 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 ATF7IP2Q5U623 682 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 TWF2Q6IBS0 349 aaKnown RBP17.28■□□□□ 0.36
HPS4-216ENST00000493455 PPP4R3CPQ6ZMV5 832 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 EPM2AIP1Q7L775 607 aaPredicted RBP17.28■□□□□ 0.36
HPS4-216ENST00000493455 RPUSD2Q8IZ73 545 aaKnown RBP17.28■□□□□ 0.36
HPS4-216ENST00000493455 HVCN1Q96D96 273 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 PRIMPOLQ96LW4 560 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 TCHPQ9BT92 498 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 ST6GALNAC4Q9H4F1 302 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 IL23AQ9NPF7 189 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 AGPAT5Q9NUQ2 364 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 CTNND2Q9UQB3 1225 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 SQORQ9Y6N5 450 aa17.28■□□□□ 0.36
HPS4-216ENST00000493455 ZBBXA8MT70 800 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 MGEA5O60502 916 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 PPP1R37O75864 691 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 KIF20AO95235 890 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 NPTXRO95502 500 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 CXCL10P02778 98 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 ABCD1P33897 745 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 PRCPP42785 496 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 NLRP12P59046 1061 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 FAM187BQ17R55 369 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 PLEKHG4Q58EX7 1191 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 EEF1DP3Q658K8 133 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 NOTUMQ6P988 496 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 CNKSR3Q6P9H4 555 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 MAP4K3Q8IVH8 894 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 TRIML1Q8N9V2 468 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 ZNF507Q8TCN5 953 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 ZBTB45Q96K62 511 aaPredicted RBP17.27■□□□□ 0.36
HPS4-216ENST00000493455 ADAM2Q99965 735 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 STRA6Q9BX79 667 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 TMX1Q9H3N1 280 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 TMEM206Q9H813 350 aa17.27■□□□□ 0.36
HPS4-216ENST00000493455 UBE4BO95155 1302 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 ANKRD63C9JTQ0 380 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 H0YGN5 161 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 N4BP3O15049 544 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 CLIC2O15247 247 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 CD44P16070 742 aaKnown RBP17.26■□□□□ 0.35
HPS4-216ENST00000493455 BMP6P22004 513 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 MAGEA10P43363 369 aaPredicted RBP17.26■□□□□ 0.35
HPS4-216ENST00000493455 DPCR1Q3MIW9 517 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 ZSCAN23Q3MJ62 389 aa17.26■□□□□ 0.35
HPS4-216ENST00000493455 ZNF568Q3ZCX4 644 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms