RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PPP2R5AQ15172 486 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 ECM1Q16610 540 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 PUS10Q3MIT2 529 aaKnown RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 UBXN11Q5T124 520 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 PDE12Q6L8Q7 609 aaKnown RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 BRAPQ7Z569 592 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 MRPL10Q7Z7H8 261 aaKnown RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 ADGRD2Q7Z7M1 963 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 HACE1Q8IYU2 909 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 CPB2Q96IY4 423 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 TRIM6Q9C030 488 aaPredicted RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 CSRNP2Q9H175 543 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 C2orf40Q9H1Z8 148 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 ENTPD7Q9NQZ7 604 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 TBC1D13Q9NVG8 400 aa16.71■□□□□ 0.27
USP39-217ENST00000491659 PRMT7Q9NVM4 692 aaPredicted RBP16.71■□□□□ 0.27
USP39-217ENST00000491659 FSD2A1L4K1 749 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 VWA3AA6NCI4 1184 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 PP2D1A8MPX8 630 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 H3BQ06 376 aaPredicted RBP16.7■□□□□ 0.26
USP39-217ENST00000491659 OFD1O75665 1012 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 ITGA4P13612 1032 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 ARF4P18085 180 aaPredicted RBP16.7■□□□□ 0.26
USP39-217ENST00000491659 BCAR1P56945 870 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 IL17AQ16552 155 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 ARL6IP4Q66PJ3 421 aaKnown RBP16.7■□□□□ 0.26
USP39-217ENST00000491659 CDCA2Q69YH5 1023 aaPredicted RBP16.7■□□□□ 0.26
USP39-217ENST00000491659 PTCRAQ6ISU1 281 aaPredicted RBP16.7■□□□□ 0.26
USP39-217ENST00000491659 AGMOQ6ZNB7 445 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 SLC39A11Q8N1S5 342 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 IFT74Q96LB3 600 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 PRIMPOLQ96LW4 560 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 NECAB3Q96P71 396 aaPredicted RBP16.7■□□□□ 0.26
USP39-217ENST00000491659 UBN1Q9NPG3 1134 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 DNM3Q9UQ16 869 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 FAM50BQ9Y247 325 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 IPPQ9Y573 584 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 PCDHGC5Q9Y5F6 944 aa16.7■□□□□ 0.26
USP39-217ENST00000491659 EYA4O95677 639 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 BMP15O95972 392 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 GTF2F1P35269 517 aaKnown RBP eCLIP16.69■□□□□ 0.26
USP39-217ENST00000491659 NAMPTP43490 491 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 NRIP1P48552 1158 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 NDUFV1P49821 464 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 ZRSR1Q15695 479 aaKnown RBP16.69■□□□□ 0.26
USP39-217ENST00000491659 AMHR2Q16671 573 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 TMEM132AQ24JP5 1023 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 CTC1Q2NKJ3 1217 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 PLPP4Q5VZY2 271 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 PPP4R3CPQ6ZMV5 832 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.69■□□□□ 0.26
USP39-217ENST00000491659 DEPTORQ8TB45 409 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 KIFAP3Q92845 792 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 TMEM169Q96HH4 297 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 CDK5RAP3Q96JB5 506 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 FAM193BQ96PV7 902 aaPredicted RBP16.69■□□□□ 0.26
USP39-217ENST00000491659 TCF25Q9BQ70 676 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 EIF2AQ9BY44 585 aaKnown RBP16.69■□□□□ 0.26
USP39-217ENST00000491659 GBP3Q9H0R5 595 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 TLE6Q9H808 572 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 KANSL3Q9P2N6 904 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 XIRP2A4UGR9 3374 aa16.69■□□□□ 0.26
USP39-217ENST00000491659 VCANP13611 3396 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 MYH11P35749 1972 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 E9PMD0 336 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 K7ELQ4 463 aaPredicted RBP16.68■□□□□ 0.26
USP39-217ENST00000491659 FSCN2O14926 492 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 B4GALT5O43286 388 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 CDC25AP30304 524 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 ERVFC1P60507 584 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 MAPK6Q16659 721 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 SLC27A1Q6PCB7 646 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 RBM23Q86U06 439 aaKnown RBP16.68■□□□□ 0.26
USP39-217ENST00000491659 EFHBQ8N7U6 833 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 SMG8Q8ND04 991 aaKnown RBP16.68■□□□□ 0.26
USP39-217ENST00000491659 BSNDQ8WZ55 320 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 CDCA3Q99618 268 aaPredicted RBP16.68■□□□□ 0.26
USP39-217ENST00000491659 NT5C3AQ9H0P0 336 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 NRDE2Q9H7Z3 1164 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 NGRNQ9NPE2 291 aaKnown RBP16.68■□□□□ 0.26
USP39-217ENST00000491659 SPTBN5Q9NRC6 3674 aaKnown RBP16.68■□□□□ 0.26
USP39-217ENST00000491659 TTC28Q96AY4 2481 aa16.68■□□□□ 0.26
USP39-217ENST00000491659 GRXCR2A6NFK2 248 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 NT5C1B-RDH14C9J2C7 533 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 N4BP3O15049 544 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 LINC01565O15544 149 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 TBX10O75333 385 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 NPTXRO95502 500 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 PRKCBP05771 671 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 IL9P15248 144 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 LTBRP36941 435 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 ADAM15Q13444 863 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 SMC1AQ14683 1233 aaKnown RBP16.67■□□□□ 0.26
USP39-217ENST00000491659 BMS1Q14692 1282 aaKnown RBP16.67■□□□□ 0.26
USP39-217ENST00000491659 FAM187BQ17R55 369 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 TMC7Q7Z402 723 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 INTS4Q96HW7 963 aaKnown RBP16.67■□□□□ 0.26
USP39-217ENST00000491659 AK8Q96MA6 479 aa16.67■□□□□ 0.26
USP39-217ENST00000491659 MMTAG2Q9BU76 263 aaKnown RBP16.67■□□□□ 0.26
USP39-217ENST00000491659 APOL6Q9BWW8 343 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms