RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TMEM174Q8WUU8 243 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 ZBTB10Q96DT7 871 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 APBA2Q99767 749 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 CRACR2AQ9BSW2 395 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 AZI2Q9H6S1 392 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 ANKZF1Q9H8Y5 726 aa13.27□□□□□ -0.29
HDAC6-230ENST00000488543 DYNC1LI2O43237 492 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-230ENST00000488543 KIF5CO60282 957 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 DGAT1O75907 488 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 GH1P01241 217 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 AFPP02771 609 aaKnown RBP13.26□□□□□ -0.29
HDAC6-230ENST00000488543 PSMC2P35998 433 aaKnown RBP13.26□□□□□ -0.29
HDAC6-230ENST00000488543 CYP2J2P51589 502 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 CDK17Q00537 523 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 APBA1Q02410 837 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 TNFAIP2Q03169 654 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 TRIM32Q13049 653 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 MYBPC2Q14324 1141 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 DUSP28Q4G0W2 176 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 C12orf56Q8IXR9 622 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 SYCP3Q8IZU3 236 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 PPP1R13LQ8WUF5 828 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 SPIRE2Q8WWL2 714 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 SOCS4Q8WXH5 440 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 KIFAP3Q92845 792 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 KIFC3Q9BVG8 833 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 FUT8Q9BYC5 575 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 GANQ9H2C0 597 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 RNPEPQ9H4A4 650 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 TMEM206Q9H813 350 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 HDAC6Q9UBN7 1215 aa13.26□□□□□ -0.29
HDAC6-230ENST00000488543 ENC1O14682 589 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 ZNF286BP0CG31 522 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 XRCC5P13010 732 aaKnown RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 MAP2K2P36507 400 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 RTP1P59025 263 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 LAMC2Q13753 1193 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 SMC1AQ14683 1233 aaKnown RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 LONRF2Q1L5Z9 754 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 PDXDC1Q6P996 788 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 MCPH1Q8NEM0 835 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 AFAP1L1Q8TED9 768 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 TRIB2Q92519 343 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 NTPCRQ9BSD7 190 aaKnown RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 NIFKQ9BYG3 293 aaKnown RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 ATP6V0A4Q9HBG4 840 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 TSKSQ9UJT2 592 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 EPN1Q9Y6I3 576 aaPredicted RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 ADGRA3Q8IWK6 1321 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 IGHA2P01877 340 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 ARHGAP25P42331 645 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 DCAF17Q5H9S7 520 aaPredicted RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 IQSEC1Q6DN90 963 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 MSL3Q8N5Y2 521 aaKnown RBP13.25□□□□□ -0.29
HDAC6-230ENST00000488543 SLC17A8Q8NDX2 589 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 CD99L2Q8TCZ2 262 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 TRAPPC12Q8WVT3 735 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 RABGGTAQ92696 567 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 C17orf75Q9HAS0 396 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 ARFGAP3Q9NP61 516 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 CEP72Q9P209 647 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 PLAGL2Q9UPG8 496 aa13.25□□□□□ -0.29
HDAC6-230ENST00000488543 A0A0U1RQG5 324 aaPredicted RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 LRRC53A6NM62 1247 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 RBAK-RBAKDNI3L0D1 243 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 N4BP1O75113 896 aaKnown RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 LGR5O75473 907 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 NDUFA10O95299 355 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 EMC2Q15006 297 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 TARBP2Q15633 366 aaKnown RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 TSR1Q2NL82 804 aaKnown RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 FAM160B1Q5W0V3 765 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 SRGAP1Q7Z6B7 1085 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 NOA1Q8NC60 698 aaKnown RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 TRPV1Q8NER1 839 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 TMEM143Q96AN5 459 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 HVCN1Q96D96 273 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 CBWD1Q9BRT8 395 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 POLR3FQ9H1D9 316 aaPredicted RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 TBX20Q9UMR3 447 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 GUCA1BQ9UMX6 200 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 CCDC169A6NNP5 214 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 ELNP15502 786 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 DMP1Q13316 513 aaPredicted RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 DRP2Q13474 957 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 PLCB4Q15147 1175 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 RRAGAQ7L523 313 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 MAP4K3Q8IVH8 894 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 OR6J1Q8NGC5 347 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 PPTC7Q8NI37 304 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 HINFPQ9BQA5 517 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 DHX33Q9H6R0 707 aaKnown RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 KMT5AQ9NQR1 393 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 CDC23Q9UJX2 597 aa13.24□□□□□ -0.29
HDAC6-230ENST00000488543 GNEQ9Y223 722 aaKnown RBP13.24□□□□□ -0.29
HDAC6-230ENST00000488543 ZBTB42B2RXF5 422 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 ANKRD63C9JTQ0 380 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 LGALS2P05162 132 aa13.23□□□□□ -0.29
HDAC6-230ENST00000488543 SLC9A1P19634 815 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms