RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 C1orf186Q6ZWK4 172 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 MRPL10Q7Z7H8 261 aaKnown RBP15.39■□□□□ 0.05
SYNE1-226ENST00000488376 CABP7Q86V35 215 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 TMEM173Q86WV6 379 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-226ENST00000488376 THNSL1Q8IYQ7 743 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 POF1BQ8WVV4 589 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 CLIC6Q96NY7 704 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 ASB2Q96Q27 587 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 USP28Q96RU2 1077 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 CSRNP2Q9H175 543 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 FZD8Q9H461 694 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 NXF3Q9H4D5 531 aaKnown RBP15.39■□□□□ 0.05
SYNE1-226ENST00000488376 TBC1D13Q9NVG8 400 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-226ENST00000488376 FBXO2Q9UK22 296 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-226ENST00000488376 IPPQ9Y573 584 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 VCANP13611 3396 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 SFI1A8K8P3 1242 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 NPTXRO95502 500 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 SSBP05455 408 aaKnown RBP eCLIP15.38■□□□□ 0.05
SYNE1-226ENST00000488376 LAG3P18627 525 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 SLC12A3P55017 1021 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 CACNB1Q02641 598 aaPredicted RBP15.38■□□□□ 0.05
SYNE1-226ENST00000488376 HYAL1Q12794 435 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 KARSQ15046 597 aaKnown RBP15.38■□□□□ 0.05
SYNE1-226ENST00000488376 TIGD5Q53EQ6 642 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 NOMO2Q5JPE7 1267 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 NOTUMQ6P988 496 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 ZNF280BQ86YH2 543 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 BCL7CQ8WUZ0 217 aaPredicted RBP15.38■□□□□ 0.05
SYNE1-226ENST00000488376 HLA-CQ95604 372 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 EPSTI1Q96J88 318 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 APOL6Q9BWW8 343 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 NSUN3Q9H649 340 aaKnown RBP15.38■□□□□ 0.05
SYNE1-226ENST00000488376 DNAJB4Q9UDY4 337 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 PCDHB12Q9Y5F1 795 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 STK24Q9Y6E0 443 aa15.38■□□□□ 0.05
SYNE1-226ENST00000488376 PLXNA4Q9HCM2 1894 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 SPTBN5Q9NRC6 3674 aaKnown RBP15.37■□□□□ 0.05
SYNE1-226ENST00000488376 LINC01565O15544 149 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 ZC3H11AO75152 810 aaKnown RBP eCLIP15.37■□□□□ 0.05
SYNE1-226ENST00000488376 DDHD2O94830 711 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 PLA2G4BP0C869 781 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 PLCG1P19174 1290 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 NCLP19338 710 aaKnown RBP15.37■□□□□ 0.05
SYNE1-226ENST00000488376 NAMPTP43490 491 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 NPTX2P47972 431 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 BCAR1P56945 870 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 ERVFC1P60507 584 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 MRPS5P82675 430 aaKnown RBP15.37■□□□□ 0.05
SYNE1-226ENST00000488376 NAALADL2Q58DX5 795 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 ARSHQ5FYA8 562 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 EEF1DP3Q658K8 133 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 GLB1LQ6UWU2 654 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 PPP4R3CPQ6ZMV5 832 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 TAS1R3Q7RTX0 852 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 DEPTORQ8TB45 409 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 ATXN2LQ8WWM7 1075 aaKnown RBP15.37■□□□□ 0.05
SYNE1-226ENST00000488376 KIFAP3Q92845 792 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 ZFP42Q96MM3 310 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 ZNF558Q96NG5 402 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 GBP3Q9H0R5 595 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 LMAN2LQ9H0V9 348 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 CXCL16Q9H2A7 254 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 PDZD7Q9H5P4 517 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 NRDE2Q9H7Z3 1164 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 UBE2ZQ9H832 354 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-226ENST00000488376 RSAD1Q9HA92 442 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 BLOC1S4Q9NUP1 217 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 MIOSQ9NXC5 875 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 CNTNAP2Q9UHC6 1331 aa15.37■□□□□ 0.05
SYNE1-226ENST00000488376 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 A0A1B0GUA9 196 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 DLL1O00548 723 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 BMP15O95972 392 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 POMCP01189 267 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 PRKCBP05771 671 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 SKIP12755 728 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 AKAP5P24588 427 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 AXLP30530 894 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 LONP1P36776 959 aaKnown RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 MLH1P40692 756 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 PEX3P56589 373 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 RBM10P98175 930 aaKnown RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 DHX8Q14562 1220 aaKnown RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 PCBP1Q15365 356 aaKnown RBP eCLIP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 FAM187BQ17R55 369 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 FOXD4L6Q3SYB3 417 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 TJAP1Q5JTD0 557 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 NT5DC1Q5TFE4 455 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 FOXD4L3Q6VB84 417 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 ZBTB8OSQ8IWT0 167 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 SLC39A11Q8N1S5 342 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 SYT2Q8N9I0 419 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 PGBD4Q96DM1 585 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 CDK5RAP3Q96JB5 506 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 AK8Q96MA6 479 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 NECAB3Q96P71 396 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-226ENST00000488376 GAD1Q99259 594 aa15.36■□□□□ 0.05
SYNE1-226ENST00000488376 IGFLR1Q9H665 355 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms