RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 XKR9Q5GH70 373 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 FIGNQ5HY92 759 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 SCFD1Q8WVM8 642 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PIK3R5Q8WYR1 880 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 RUSC1Q9BVN2 902 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 DNAJC12Q9UKB3 198 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 LRRD1A4D1F6 860 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PPP1R11O60927 126 aaPredicted RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 BRAFP15056 766 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 MSH2P43246 934 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 ALDH5A1P51649 535 aaPredicted RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PSMD2Q13200 908 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 GRM1Q13255 1194 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 COG2Q14746 738 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 LRIG3Q6UXM1 1119 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 SLC35G2Q8TBE7 412 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 C1orf54Q8WWF1 131 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 NR2E1Q9Y466 385 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PHRF1Q9P1Y6 1649 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 ATP2A2P16615 1042 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 EIF3BP55884 814 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 CDK17Q00537 523 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PLCB4Q15147 1175 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 RBBP5Q15291 538 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 DAGLBQ8NCG7 672 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 SPDYE1Q8NFV5 336 aaPredicted RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 TPCN2Q8NHX9 752 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 HAS1Q92839 578 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PDGFDQ9GZP0 370 aaPredicted RBP13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 RIOX1Q9H6W3 641 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 PARVGQ9HBI0 331 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 LAMB4A4D0S4 1761 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 FGRP09769 529 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 ITIH3Q06033 890 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 BYSLQ13895 437 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 PDIA5Q14554 519 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 TGS1Q96RS0 853 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 TSC22D3Q99576 134 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 PNMA3Q9UL41 463 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 TRPC6Q9Y210 931 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 TMEM120BA0PK00 339 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 MYL7Q01449 175 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 KIAA1755Q5JYT7 1200 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 ERICH1Q86X53 443 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 RUBCNQ92622 972 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 NAP1L4Q99733 375 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 PITPNM3Q9BZ71 974 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 FAM129AQ9BZQ8 928 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 ATP6V0A4Q9HBG4 840 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 ALS2Q96Q42 1657 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 TMEM150BA6NC51 233 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 AP1G2O75843 785 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 FXR2P51116 673 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 DRAP1Q14919 205 aaPredicted RBP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 C6orf118Q5T5N4 469 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 THEMIS2Q5TEJ8 643 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 CCDC137Q6PK04 289 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 YTHDF3Q7Z739 585 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 JAMLQ86YT9 394 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 CCDC77Q9BR77 488 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 HEMGNQ9BXL5 484 aa13.24□□□□□ -0.29
SHROOM3-208ENST00000486758 MYH6P13533 1939 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 CCDC160A6NGH7 325 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PPP1R12AO14974 1030 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PSMC2P35998 433 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 RNASELQ05823 741 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 TSNAXIP1Q2TAA8 658 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 AGBL2Q5U5Z8 902 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 HGSNATQ68CP4 663 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 LMBRD2Q68DH5 695 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 ZNF365Q70YC5 407 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 CHD4Q14839 1912 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 FAM86B1E9PN63 330 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 AKAP3O75969 853 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 IFNB1P01574 187 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 FAM86B2P0C5J1 330 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 NPR1P16066 1061 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 DRD4P21917 467 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PEX3P56589 373 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 CC2D2BQ6DHV5 1058 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 TMEM179Q6ZVK1 233 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 MCUR1Q96AQ8 359 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PRMT6Q96LA8 375 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 GLT8D2Q9H1C3 349 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 VPS37BQ9H9H4 285 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 ZNF277Q9NRM2 450 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 DCTN4Q9UJW0 460 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 USP15Q9Y4E8 981 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 SLIT2O94813 1529 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 MYH7P12883 1935 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 NQO1P15559 274 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 C2CD6Q53TS8 623 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PRAMEF18Q5VWM3 479 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 SCYL3Q8IZE3 742 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 DTX3LQ8TDB6 740 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 PARD3BQ8TEW8 1205 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 ZNF668Q96K58 619 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 BTBD6Q96KE9 485 aa13.23□□□□□ -0.29
SHROOM3-208ENST00000486758 TMEM237Q96Q45 408 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms