RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CUEDC2Q9H467 287 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 RGL1Q9NZL6 768 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 WRAP73Q9P2S5 460 aaPredicted RBP18.85■□□□□ 0.61
VIM-205ENST00000485947 HOOK1Q9UJC3 728 aaKnown RBP18.85■□□□□ 0.61
VIM-205ENST00000485947 PCDHB12Q9Y5F1 795 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 COL4A3BPQ9Y5P4 624 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 MUC6Q6W4X9 2439 aa18.85■□□□□ 0.61
VIM-205ENST00000485947 LOXHD1Q8IVV2 1947 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 A0A087WZ62 844 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 TMEM150BA6NC51 233 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 MUTP22033 750 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 RAB27AP51159 221 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 NPEPPSP55786 919 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 MXD4Q14582 209 aaPredicted RBP18.84■□□□□ 0.61
VIM-205ENST00000485947 XKR9Q5GH70 373 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 HYIQ5T013 277 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 PLA2G4FQ68DD2 849 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 RBM43Q6ZSC3 357 aaKnown RBP18.84■□□□□ 0.61
VIM-205ENST00000485947 ECHDC2Q86YB7 292 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 TPH2Q8IWU9 490 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 CEP57L1Q8IYX8 460 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 KCTD17Q8N5Z5 321 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 CNNM3Q8NE01 707 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 RASSF8Q8NHQ8 419 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 SNX29Q8TEQ0 813 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 FDXACB1Q9BRP7 624 aaPredicted RBP18.84■□□□□ 0.61
VIM-205ENST00000485947 UBE2ZQ9H832 354 aaPredicted RBP18.84■□□□□ 0.61
VIM-205ENST00000485947 MAGEF1Q9HAY2 307 aa18.84■□□□□ 0.61
VIM-205ENST00000485947 A0A087X0B3 334 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 FSD2A1L4K1 749 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 TBKBP1A7MCY6 615 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 PP2D1A8MPX8 630 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 DGAT1O75907 488 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 SLFN14P0C7P3 912 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 LAG3P18627 525 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 CTTNQ14247 550 aaKnown RBP18.83■□□□□ 0.6
VIM-205ENST00000485947 E2F4Q16254 413 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 LEXMQ3ZCV2 418 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 RRAGBQ5VZM2 374 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 PDE12Q6L8Q7 609 aaKnown RBP18.83■□□□□ 0.6
VIM-205ENST00000485947 ABI1Q8IZP0 508 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 PDILTQ8N807 584 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 DHX58Q96C10 678 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 PABPC5Q96DU9 382 aaKnown RBP18.83■□□□□ 0.6
VIM-205ENST00000485947 MMTAG2Q9BU76 263 aaKnown RBP18.83■□□□□ 0.6
VIM-205ENST00000485947 NT5C3AQ9H0P0 336 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 GZF1Q9H116 711 aaPredicted RBP18.83■□□□□ 0.6
VIM-205ENST00000485947 IFT122Q9HBG6 1241 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 TUFT1Q9NNX1 390 aa18.83■□□□□ 0.6
VIM-205ENST00000485947 GRM6O15303 877 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 ACTN4O43707 911 aaKnown RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 ZNF623O75123 536 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 CDC25AP30304 524 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 STAT6P42226 847 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 ZNF445P59923 1031 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 CYP4A11Q02928 519 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 TFF2Q03403 129 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 EMC2Q15006 297 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 KARSQ15046 597 aaKnown RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 LONRF3Q496Y0 759 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 PAN2Q504Q3 1202 aaKnown RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 FAM102BQ5T8I3 360 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 ZNF598Q86UK7 904 aaKnown RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 LRRC43Q8N309 656 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 SPPL3Q8TCT6 385 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 PRPF31Q8WWY3 499 aaKnown RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 CDK5RAP3Q96JB5 506 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 NECAB3Q96P71 396 aaPredicted RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 MTRQ99707 1265 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 SH2D3AQ9BRG2 576 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 POLR3CQ9BUI4 534 aaPredicted RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 MRPL9Q9BYD2 267 aaKnown RBP18.82■□□□□ 0.6
VIM-205ENST00000485947 STK17AQ9UEE5 414 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 SERTAD1Q9UHV2 236 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 LZTS1Q9Y250 596 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 NLRC5Q86WI3 1866 aa18.82■□□□□ 0.6
VIM-205ENST00000485947 RBAK-RBAKDNI3L0D1 243 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 ITGB1P05556 798 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 PPM1AP35813 382 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 LAMTOR4Q0VGL1 99 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 TFDP1Q14186 410 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 CAMK4Q16566 473 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 CATSPER4Q7RTX7 472 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 IFNLR1Q8IU57 520 aaPredicted RBP18.81■□□□□ 0.6
VIM-205ENST00000485947 KLHL23Q8NBE8 558 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 NLRP4Q96MN2 994 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 CCDC43Q96MW1 224 aaKnown RBP18.81■□□□□ 0.6
VIM-205ENST00000485947 FAM50BQ9Y247 325 aa18.81■□□□□ 0.6
VIM-205ENST00000485947 RPA1P27694 616 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 AXLP30530 894 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 CCT6AP40227 531 aaKnown RBP18.8■□□□□ 0.6
VIM-205ENST00000485947 PHKA2P46019 1235 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 PLCB3Q01970 1234 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 TMEM119Q4V9L6 283 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 TCEAL5Q5H9L2 206 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 SPOUT1Q5T280 376 aaKnown RBP18.8■□□□□ 0.6
VIM-205ENST00000485947 CASD1Q96PB1 797 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 NACC1Q96RE7 527 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 NFKBIZQ9BYH8 718 aa18.8■□□□□ 0.6
VIM-205ENST00000485947 PANK2Q9BZ23 570 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms