RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 EMC7Q9NPA0 242 aa4.82□□□□□ -1.64
VPS41-212ENST00000482217 PRDM11Q9NQV5 511 aa4.82□□□□□ -1.64
VPS41-212ENST00000482217 ANLNQ9NQW6 1124 aa4.82□□□□□ -1.64
VPS41-212ENST00000482217 SMC4Q9NTJ3 1288 aa4.82□□□□□ -1.64
VPS41-212ENST00000482217 SPTLC3Q9NUV7 552 aa4.82□□□□□ -1.64
VPS41-212ENST00000482217 MAFFQ9ULX9 164 aa4.82□□□□□ -1.64
VPS41-212ENST00000482217 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 ACOT7O00154 380 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 DVL2O14641 736 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 GFPT2O94808 682 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 ASGR2P07307 311 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 IFIT1P09914 478 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 SETSIPP0DME0 302 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 FBLN1P23142 703 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 PSMA3P25788 255 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 CFPP27918 469 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 ID4P47928 161 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 ZNF132P52740 706 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 COPAP53621 1224 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 SESN3P58005 492 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 PHC1P78364 1004 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 SRSF3P84103 164 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 ZNF200P98182 395 aaPredicted RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 PPP2R5CQ13362 524 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 LRRC32Q14392 662 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 SEC23AQ15436 765 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 HSP90AB3PQ58FF7 597 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 TMEM132EQ6IEE7 984 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 CXorf57Q6NSI4 855 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 RTL10Q7L3V2 364 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 RASGRP2Q7LDG7 609 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 ZC3H18Q86VM9 953 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 NME9Q86XW9 330 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 ANKRD13BQ86YJ7 626 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 LRRC56Q8IYG6 542 aaPredicted RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 ZZZ3Q8IYH5 903 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 FAM26EQ8N5C1 309 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 GIMAP8Q8ND71 665 aaPredicted RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 ZFPM2Q8WW38 1151 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 CDK5RAP3Q96JB5 506 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 ELF4Q99607 663 aaPredicted RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 NAA15Q9BXJ9 866 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 PUS7LQ9H0K6 701 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 PCDH18Q9HCL0 1135 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 KLHL11Q9NVR0 708 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 SIRT5Q9NXA8 310 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 CEP72Q9P209 647 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 RABL2BQ9UNT1 228 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 SMG5Q9UPR3 1016 aaKnown RBP4.81□□□□□ -1.64
VPS41-212ENST00000482217 GPR52Q9Y2T5 361 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 SNX5Q9Y5X3 404 aa4.81□□□□□ -1.64
VPS41-212ENST00000482217 PRAMEF25A6NGN4 478 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 GOLGA6L6A8MZA4 724 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 NPIPB6E9PJ23 425 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 FOXP2O15409 715 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 TGM5O43548 720 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 TMCC2O75069 709 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 ARIH2O95376 493 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 CD4P01730 458 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 LRG1P02750 347 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 PYGLP06737 847 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 HNRNPCP07910 306 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS41-212ENST00000482217 PHKG2P15735 406 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 PFKLP17858 780 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 SLC9A1P19634 815 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 RAD52P43351 418 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 MAPK9P45984 424 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 LINC00310P59036 64 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 NKX3-2P78367 333 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 IRX3P78415 501 aaPredicted RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 TMPRSS15P98073 1019 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 GRIN1Q05586 938 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 CACNB2Q08289 660 aaPredicted RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 TBX2Q13207 712 aaPredicted RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 GBX1Q14549 363 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 TMEM132BQ14DG7 1078 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 LCE1DQ5T752 114 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 CIAPIN1Q6FI81 312 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 PLBD1Q6P4A8 553 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 TEPPQ6URK8 271 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 SPOCD1Q6ZMY3 1216 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 CCDC129Q6ZRS4 1044 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 EPM2AIP1Q7L775 607 aaPredicted RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 ARL10Q8N8L6 244 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 SLC5A5Q92911 643 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 DDX11Q96FC9 970 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 YTHDC1Q96MU7 727 aaKnown RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 SLX1AQ9BQ83 275 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 FAM167BQ9BTA0 163 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 ZCCHC17Q9NP64 241 aaKnown RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 NLRC4Q9NPP4 1024 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 H2AFY2Q9P0M6 372 aaPredicted RBP4.8□□□□□ -1.64
VPS41-212ENST00000482217 TBK1Q9UHD2 729 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 SMC3Q9UQE7 1217 aa4.8□□□□□ -1.64
VPS41-212ENST00000482217 FRMPD2Q68DX3 1309 aaPredicted RBP4.79□□□□□ -1.64
VPS41-212ENST00000482217 SYNDIG1LA6NDD5 238 aa4.79□□□□□ -1.64
VPS41-212ENST00000482217 K7ENM7 598 aa4.79□□□□□ -1.64
VPS41-212ENST00000482217 RFXAPO00287 272 aa4.79□□□□□ -1.64
VPS41-212ENST00000482217 MBD4O95243 580 aa4.79□□□□□ -1.64
VPS41-212ENST00000482217 ENO2P09104 434 aaPredicted RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms