RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 MFSD4BQ5TF39 518 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 IZUMO2Q6UXV1 221 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 IRF2BP2Q7Z5L9 587 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 SRRM1Q8IYB3 904 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 GANQ9H2C0 597 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 CDC42EP4Q9H3Q1 356 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 SLC52A2Q9HAB3 445 aa22.75■■□□□ 1.23
SDF4-206ENST00000478938 DDX43Q9NXZ2 648 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 PAIP2BQ9ULR5 123 aaKnown RBP22.75■■□□□ 1.23
SDF4-206ENST00000478938 NBPF26B4DH59 902 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 STRN3Q13033 797 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 ZCWPW2Q504Y3 356 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 ARHGEF18Q6ZSZ5 1173 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 SERPINB12Q96P63 405 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 OLFM3Q96PB7 478 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 PRDM16Q9HAZ2 1276 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 STX18Q9P2W9 335 aaKnown RBP22.74■■□□□ 1.23
SDF4-206ENST00000478938 WDR37Q9Y2I8 494 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 TBC1D30Q9Y2I9 924 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 NUMBLQ9Y6R0 609 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 EXOC3O60645 756 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 RNASEH1O60930 286 aaKnown RBP22.74■■□□□ 1.23
SDF4-206ENST00000478938 GJA8P48165 433 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 LRRC63Q05C16 580 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 TROAPQ12815 778 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 SYCE1Q8N0S2 351 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 GPKOWQ92917 476 aaPredicted RBP eCLIP22.74■■□□□ 1.23
SDF4-206ENST00000478938 STMN2Q93045 179 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 ZNF653Q96CK0 615 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 ZBTB3Q9H5J0 574 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.74■■□□□ 1.233e-6■■■■□ 23.1
SDF4-206ENST00000478938 CLIC5Q9NZA1 410 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 ARPP21Q9UBL0 812 aaPredicted RBP22.74■■□□□ 1.23
SDF4-206ENST00000478938 STARD13Q9Y3M8 1113 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 COL4A3BPQ9Y5P4 624 aa22.74■■□□□ 1.23
SDF4-206ENST00000478938 TJP1Q07157 1748 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 CCDC88AQ3V6T2 1871 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 GRIA2P42262 883 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 ERFP50548 548 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 INF2Q27J81 1249 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 ZNF554Q86TJ5 538 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 NELFCDQ8IXH7 590 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 BLIDQ8IZY5 108 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 SPIRE2Q8WWL2 714 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 MAGEF1Q9HAY2 307 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 ZNF142P52746 1687 aaPredicted RBP22.73■■□□□ 1.23
SDF4-206ENST00000478938 RIC1Q4ADV7 1423 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 UMODL1Q5DID0 1318 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 CFAP157Q5JU67 520 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 DAB2IPQ5VWQ8 1189 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 TTC27Q6P3X3 843 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 RFX8Q6ZV50 586 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 SMYD1Q8NB12 490 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 ZSCAN10Q96SZ4 725 aaPredicted RBP22.73■■□□□ 1.23
SDF4-206ENST00000478938 ZFP69BQ9UJL9 534 aa22.73■■□□□ 1.23
SDF4-206ENST00000478938 RAD21O60216 631 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 WDR4P57081 412 aaKnown RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 NCCRP1Q6ZVX7 275 aaPredicted RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 SATL1Q86VE3 508 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 ST13P4Q8IZP2 240 aaPredicted RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 GUF1Q8N442 669 aaKnown RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 MTA3Q9BTC8 594 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 NACAP1Q9BZK3 213 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 SYNCQ9H7C4 482 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 PCDH18Q9HCL0 1135 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 ARHGEF38Q9NXL2 777 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 FBXO3Q9UK99 471 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 BARX2Q9UMQ3 279 aaPredicted RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 SH3GLB1Q9Y371 365 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 H2AFZP0C0S5 128 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 PABPC4LP0CB38 370 aaKnown RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 CYP11B2P19099 503 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 VARSP26640 1264 aaKnown RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 ATP5DP30049 168 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 GALK1P51570 392 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 H2AFVQ71UI9 128 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 CFAP61Q8NHU2 1237 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 HAUS1Q96CS2 278 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 CCDC28BQ9BUN5 200 aa22.72■■□□□ 1.23
SDF4-206ENST00000478938 RNF41Q9H4P4 317 aaPredicted RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 DNAJC17Q9NVM6 304 aaKnown RBP22.72■■□□□ 1.23
SDF4-206ENST00000478938 MYMKA6NI61 221 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 TRAF5O00463 557 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 MIGA1Q8NAN2 632 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 C10orf82Q8WW14 230 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 RUNDC3BQ96NL0 473 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 TCP11L1Q9NUJ3 509 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 TMOD4Q9NZQ9 345 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 PTPN22Q9Y2R2 807 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 PCDHA3Q9Y5H8 950 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 BCORQ6W2J9 1755 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 OPHN1O60890 802 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 SULT2A1Q06520 285 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 R3HDM1Q15032 1099 aaKnown RBP22.71■■□□□ 1.23
SDF4-206ENST00000478938 CATSPER2Q96P56 530 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 INIPQ9NRY2 104 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 ZNF212Q9UDV6 495 aa22.71■■□□□ 1.23
SDF4-206ENST00000478938 MYH3P11055 1940 aa22.7■■□□□ 1.23
SDF4-206ENST00000478938 CCDC194A0A1B0GVG4 234 aa22.7■■□□□ 1.22
SDF4-206ENST00000478938 CETPP11597 493 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms