RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SGCZQ96LD1 299 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 RSAD1Q9HA92 442 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 PCDH18Q9HCL0 1135 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 DMRT3Q9NQL9 472 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 ARHGAP20Q9P2F6 1191 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.43□□□□□ -1.38
UPF3B-203ENST00000478840 DMTF1Q9Y222 760 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 PCDHGB6Q9Y5F9 930 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 IRS2Q9Y4H2 1338 aa6.43□□□□□ -1.38
UPF3B-203ENST00000478840 TMEM127O75204 238 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 MYL3P08590 195 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 NCAM1P13591 858 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 MAP3K12Q12852 859 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 IFIT5Q13325 482 aaKnown RBP6.42□□□□□ -1.38
UPF3B-203ENST00000478840 IL10RAQ13651 578 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 POLD3Q15054 466 aaPredicted RBP6.42□□□□□ -1.38
UPF3B-203ENST00000478840 TMEM95Q3KNT9 176 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 HSP90AB4PQ58FF6 505 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 FAM180AQ6UWF9 173 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 TMC5Q6UXY8 1006 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 CD300LDQ6UXZ3 194 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 DAAM2Q86T65 1068 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 GPR156Q8NFN8 814 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.42□□□□□ -1.38
UPF3B-203ENST00000478840 WDR48Q8TAF3 677 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 LRTOMTQ8WZ04 291 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 DPF2Q92785 391 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 RGMAQ96B86 450 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 KIRREL1Q96J84 757 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 KCND1Q9NSA2 647 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 PLA2G2DQ9UNK4 145 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 PCDHB1Q9Y5F3 818 aa6.42□□□□□ -1.38
UPF3B-203ENST00000478840 A0A1W2PR48 441 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 RASA4BC9J798 803 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 RASA4O43374 803 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 HK3P52790 923 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 ANTXR2P58335 489 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 CD83Q01151 205 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 SEPT2Q15019 361 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 FYB2Q5VWT5 728 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 TMEM200BQ69YZ2 307 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 LMBR1LQ6UX01 489 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 BCL6BQ8N143 479 aaPredicted RBP6.41□□□□□ -1.38
UPF3B-203ENST00000478840 KAT5Q92993 513 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 DYDC2Q96IM9 177 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 CCDC138Q96M89 665 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 C7orf25Q9BPX7 421 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 SELENOOQ9BVL4 669 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 BTBD1Q9H0C5 482 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 DCP1AQ9NPI6 582 aaPredicted RBP6.41□□□□□ -1.38
UPF3B-203ENST00000478840 POLR3BQ9NW08 1133 aaPredicted RBP6.41□□□□□ -1.38
UPF3B-203ENST00000478840 NR2E3Q9Y5X4 410 aa6.41□□□□□ -1.38
UPF3B-203ENST00000478840 HYAL3O43820 417 aaPredicted RBP6.4□□□□□ -1.38
UPF3B-203ENST00000478840 MGEA5O60502 916 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 PHF2O75151 1096 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 FGAP02671 866 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 FTLP02792 175 aaPredicted RBP6.4□□□□□ -1.38
UPF3B-203ENST00000478840 CHGBP05060 677 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 MYF5P13349 255 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 RPL17P18621 184 aaKnown RBP6.4□□□□□ -1.38
UPF3B-203ENST00000478840 RAB1AP62820 205 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 ZNF200P98182 395 aaPredicted RBP6.4□□□□□ -1.38
UPF3B-203ENST00000478840 BTKQ06187 659 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 MGAT5Q09328 741 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 MAN2A1Q16706 1144 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 GRAMD4Q6IC98 578 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 DPP9Q86TI2 863 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 PLBD2Q8NHP8 589 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 DEPTORQ8TB45 409 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 PPM1EQ8WY54 764 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 PHKBQ93100 1093 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 DMRTA2Q96SC8 542 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 C22orf23Q9BZE7 217 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 ZNF552Q9H707 407 aaPredicted RBP6.4□□□□□ -1.38
UPF3B-203ENST00000478840 EPB41L4AQ9HCS5 686 aaPredicted RBP6.4□□□□□ -1.38
UPF3B-203ENST00000478840 FNIP2Q9P278 1114 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 ZFP69BQ9UJL9 534 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 FBXO10Q9UK96 956 aa6.4□□□□□ -1.38
UPF3B-203ENST00000478840 RPTORQ8N122 1335 aa6.4□□□□□ -1.39
UPF3B-203ENST00000478840 ENDOD1O94919 500 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 LY86O95711 162 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 LTA4HP09960 611 aaKnown RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 CYP2C8P10632 490 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 TYRP1P17643 537 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 CTSSP25774 331 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 VIPR1P32241 457 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 NKX6-1P78426 367 aaPredicted RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 CDC42EP1Q00587 391 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 CHAF1AQ13111 956 aaPredicted RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 NOGQ13253 232 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 ADAM9Q13443 819 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 RAPGEF1Q13905 1077 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 C19orf54Q5BKX5 351 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 ARTNQ5T4W7 220 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 C1orf228Q6PIY5 440 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 APOA5Q6Q788 366 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 TMC6Q7Z403 805 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 ATG4DQ86TL0 474 aaPredicted RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 DRC7Q8IY82 874 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 UNC5BQ8IZJ1 945 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms