RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 CPEB3Q8NE35 698 aaKnown RBP3.33□□□□□ -1.88
CCDC39-203ENST00000473854 FOXRED1Q96CU9 486 aaPredicted RBP3.33□□□□□ -1.88
CCDC39-203ENST00000473854 MAML3Q96JK9 1138 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 ZNF778Q96MU6 729 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 CELF4Q9BZC1 486 aaKnown RBP3.33□□□□□ -1.88
CCDC39-203ENST00000473854 RNF181Q9P0P0 153 aa3.33□□□□□ -1.88
CCDC39-203ENST00000473854 UBA6A0AVT1 1052 aaPredicted RBP3.32□□□□□ -1.88
CCDC39-203ENST00000473854 PRR5-ARHGAP8B1AHC4 643 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 STC2O76061 302 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 MATN4O95460 622 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 NPTXRO95502 500 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 EGR2P11161 476 aaPredicted RBP3.32□□□□□ -1.88
CCDC39-203ENST00000473854 HSP90B1P14625 803 aaKnown RBP3.32□□□□□ -1.88
CCDC39-203ENST00000473854 MGAT1P26572 445 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ETFBP38117 255 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 MPLP40238 635 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 RGS3P49796 1198 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 CACNA2D1P54289 1103 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ZNF169Q14929 603 aaPredicted RBP3.32□□□□□ -1.88
CCDC39-203ENST00000473854 FAM214AQ32MH5 1076 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 TTC38Q5R3I4 469 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ZNF425Q6IV72 752 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 CRELD2Q6UXH1 353 aaPredicted RBP3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ARHGEF25Q86VW2 580 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 NME9Q86XW9 330 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ZNF428Q96B54 188 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 IL17RAQ96F46 866 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 CDC6Q99741 560 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ADGRE3Q9BY15 652 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 ACBD3Q9H3P7 528 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 DNAI1Q9UI46 699 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 CNTNAP2Q9UHC6 1331 aa3.32□□□□□ -1.88
CCDC39-203ENST00000473854 BMP15O95972 392 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 ZSCAN20P17040 1043 aaPredicted RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 FDXRP22570 491 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 PLA2G5P39877 138 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 RARRES1P49788 294 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 IRF9Q00978 393 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 GNL2Q13823 731 aaKnown RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 TM4SF20Q53R12 229 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 YOD1Q5VVQ6 348 aaPredicted RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 DRICH1Q6PGQ1 229 aaPredicted RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 SLC44A3Q8N4M1 653 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 HEPHQ9BQS7 1158 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 KRTAP2-2Q9BYT5 123 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 CPEB1Q9BZB8 566 aaKnown RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 ENKD1Q9H0I2 346 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 ALG13Q9NP73 1137 aaKnown RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 USP36Q9P275 1121 aaKnown RBP3.31□□□□□ -1.88
CCDC39-203ENST00000473854 SLC17A6Q9P2U8 582 aa3.31□□□□□ -1.88
CCDC39-203ENST00000473854 TRBV23-1A0A0A0MS06 115 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 EFCAB14O75071 495 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 RASGRP1O95267 797 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 CRTAMO95727 393 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 FOSP01100 380 aaPredicted RBP3.3□□□□□ -1.88
CCDC39-203ENST00000473854 RBP3P10745 1247 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 ITGAMP11215 1152 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 PTGER1P34995 402 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 RNASE9P60153 205 aaKnown RBP3.3□□□□□ -1.88
CCDC39-203ENST00000473854 SIM1P81133 766 aaPredicted RBP3.3□□□□□ -1.88
CCDC39-203ENST00000473854 MRPL49Q13405 166 aaKnown RBP3.3□□□□□ -1.88
CCDC39-203ENST00000473854 TP53BP2Q13625 1128 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 EZH2Q15910 746 aaKnown RBP3.3□□□□□ -1.88
CCDC39-203ENST00000473854 KLHL22Q53GT1 634 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 ANKS3Q6ZW76 656 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 OR5M3Q8NGP4 307 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 ASB10Q8WXI3 467 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 BOCQ9BWV1 1114 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 ZNF408Q9H9D4 720 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 ST7Q9NRC1 585 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 PCDHA9Q9Y5H5 950 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 FPGT-TNNI3KV9GXZ4 949 aa3.3□□□□□ -1.88
CCDC39-203ENST00000473854 UNC119BA6NIH7 251 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 SPDEFO95238 335 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 HNRNPLP14866 589 aaKnown RBP eCLIP3.29□□□□□ -1.88
CCDC39-203ENST00000473854 GZMKP49863 264 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 NHLH2Q02577 135 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 OCA2Q04671 838 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 ARHGAP44Q17R89 818 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 PRAMEF9Q5VWM5 478 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 UNC5BQ8IZJ1 945 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 SH2D3CQ8N5H7 860 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 C2orf69Q8N8R5 385 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 SPATA9Q9BWV2 254 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 LSM14BQ9BX40 385 aaKnown RBP3.29□□□□□ -1.88
CCDC39-203ENST00000473854 ALOXE3Q9BYJ1 711 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 LRIT1Q9P2V4 623 aa3.29□□□□□ -1.88
CCDC39-203ENST00000473854 CGB1A6NKQ9 187 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 TRIM38O00635 465 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 C1QL1O75973 258 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 CDKL5O76039 1030 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 C6orf222P0C671 652 aaPredicted RBP3.28□□□□□ -1.88
CCDC39-203ENST00000473854 SPDYE7PQ495Y7 208 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 HIST1H2AHQ96KK5 128 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 TUBGCP5Q96RT8 1024 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 HIST1H2AJQ99878 128 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 ADAM2Q99965 735 aa3.28□□□□□ -1.88
CCDC39-203ENST00000473854 PITHD1Q9GZP4 211 aaPredicted RBP3.28□□□□□ -1.88
CCDC39-203ENST00000473854 A0A0A6YYJ9 748 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms