RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 GPR153Q6NV75 609 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 SV2BQ7L1I2 683 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 TAS1R3Q7RTX0 852 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 SP7Q8TDD2 431 aaPredicted RBP12.87□□□□□ -0.35
CUX1-207ENST00000465461 MYLIPQ8WY64 445 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 DRC1Q96MC2 740 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 NFKBIZQ9BYH8 718 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 CCDC113Q9H0I3 377 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 FZD8Q9H461 694 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 RC3H2Q9HBD1 1191 aaKnown RBP12.87□□□□□ -0.35
CUX1-207ENST00000465461 FAM105AQ9NUU6 356 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 TMEM161AQ9NX61 479 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 DACT1Q9NYF0 836 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 STK17AQ9UEE5 414 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 RBM19Q9Y4C8 960 aaKnown RBP12.87□□□□□ -0.35
CUX1-207ENST00000465461 HES2Q9Y543 173 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 PCDHB2Q9Y5E7 798 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 K7ERI5 159 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 FAM13AO94988 1023 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 NPTXRO95502 500 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 CASP1P29466 404 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 PRPF4BQ13523 1007 aaKnown RBP12.86□□□□□ -0.35
CUX1-207ENST00000465461 BTG3Q14201 252 aaPredicted RBP12.86□□□□□ -0.35
CUX1-207ENST00000465461 MAPK6Q16659 721 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 TMEM132AQ24JP5 1023 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 CLLU1OSQ5K130 101 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 NT5DC1Q5TFE4 455 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 EEF1DP3Q658K8 133 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 ZNF598Q86UK7 904 aaKnown RBP12.86□□□□□ -0.35
CUX1-207ENST00000465461 MYCT1Q8N699 235 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 DDX12PQ92771 950 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 CDX2Q99626 313 aaPredicted RBP12.86□□□□□ -0.35
CUX1-207ENST00000465461 TIPINQ9BVW5 301 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 APOL6Q9BWW8 343 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 C2orf40Q9H1Z8 148 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 PRMT7Q9NVM4 692 aaPredicted RBP12.86□□□□□ -0.35
CUX1-207ENST00000465461 FAM13BQ9NYF5 915 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 KCND2Q9NZV8 630 aa12.86□□□□□ -0.35
CUX1-207ENST00000465461 MRPL42Q9Y6G3 142 aaKnown RBP12.86□□□□□ -0.35
CUX1-207ENST00000465461 MYH11P35749 1972 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 LINC00271P0C7V0 271 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 PFKFB1P16118 471 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 NMT1P30419 496 aaKnown RBP12.85□□□□□ -0.35
CUX1-207ENST00000465461 AFF1P51825 1210 aaKnown RBP12.85□□□□□ -0.35
CUX1-207ENST00000465461 ADALQ6DHV7 355 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 NOTUMQ6P988 496 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 LRRC55Q6ZSA7 311 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 GRAMD1CQ8IYS0 662 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 FIBCD1Q8N539 461 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 SMG8Q8ND04 991 aaKnown RBP12.85□□□□□ -0.35
CUX1-207ENST00000465461 HELQQ8TDG4 1101 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 DNAJC19Q96DA6 116 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 CASD1Q96PB1 797 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 SCAND2PQ9GZW5 306 aaPredicted RBP12.85□□□□□ -0.35
CUX1-207ENST00000465461 PDZD7Q9H5P4 517 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 ELAC1Q9H777 363 aaKnown RBP12.85□□□□□ -0.35
CUX1-207ENST00000465461 TBC1D7Q9P0N9 293 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 ARHGAP28Q9P2N2 729 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 SERTAD1Q9UHV2 236 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 KCNH3Q9ULD8 1083 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 ODF2LQ9ULJ1 636 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 IPPQ9Y573 584 aa12.85□□□□□ -0.35
CUX1-207ENST00000465461 TMEM265A0A087WTH1 108 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 A0A1B0GUA9 196 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 ACKR2O00590 384 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 TRAK2O60296 914 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 TBCAO75347 108 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 IDEP14735 1019 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 AKAP5P24588 427 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 AXLP30530 894 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 AFMP43652 599 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 ERVK-21P61565 698 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 NCBP1Q09161 790 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 ADGRE1Q14246 886 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 FAM187BQ17R55 369 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 ZC2HC1CQ53FD0 456 aaPredicted RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 AGMOQ6ZNB7 445 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 SFR1Q86XK3 245 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 CMTR2Q8IYT2 770 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 IQUBQ8NA54 791 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 TMEM161BQ8NDZ6 487 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 GDPD5Q8WTR4 605 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 SPIRE2Q8WWL2 714 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 TGS1Q96RS0 853 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 FIZ1Q96SL8 496 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 NTPCRQ9BSD7 190 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 TARS2Q9BW92 718 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 TRAIPQ9BWF2 469 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 BLZF1Q9H2G9 400 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 GOLPH3LQ9H4A5 285 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 NXF3Q9H4D5 531 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 C17orf75Q9HAS0 396 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 PARVGQ9HBI0 331 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 TYW1Q9NV66 732 aaKnown RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 INPP5FQ9Y2H2 1132 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 SZT2Q5T011 3432 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 FNDC1Q4ZHG4 1894 aaPredicted RBP12.84□□□□□ -0.35
CUX1-207ENST00000465461 CNTNAP2Q9UHC6 1331 aa12.84□□□□□ -0.35
CUX1-207ENST00000465461 LAMA2P24043 3122 aaKnown RBP12.83□□□□□ -0.36
CUX1-207ENST00000465461 K7ENM7 598 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms