RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 GH2P01242 217 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 TNFAIP3P21580 790 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 DRD4P21917 467 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 PMS2P54278 862 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 MAP2K1Q02750 393 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 KNOP1Q1ED39 458 aaKnown RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 DCAF8Q5TAQ9 597 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 DCAF12L1Q5VU92 463 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 CCDC105Q8IYK2 499 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 ACTRT1Q8TDG2 376 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 KRT35Q92764 455 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 CEP63Q96MT8 703 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 TMX4Q9H1E5 349 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 NOD2Q9HC29 1040 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 DNM3Q9UQ16 869 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 SPDYE2BA6NHP3 402 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 SPDYE6P0CI01 402 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 RPA1P27694 616 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 KCNJ2P63252 427 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 MTMR3Q13615 1198 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 ZNF772Q68DY9 489 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 LNX1Q8TBB1 728 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 LMBR1Q8WVP7 490 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 RNF25Q96BH1 459 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 EDEM3Q9BZQ6 932 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 HERC5Q9UII4 1024 aaKnown RBP13.42□□□□□ -0.26
HDAC4-208ENST00000463007 DNAJC12Q9UKB3 198 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 CEP83Q9Y592 693 aa13.42□□□□□ -0.26
HDAC4-208ENST00000463007 LOXHD1Q8IVV2 1947 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 GNA14O95837 355 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 CC2D2BQ6DHV5 1058 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 FBXO11Q86XK2 927 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 SPICE1Q8N0Z3 855 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 RUSC1Q9BVN2 902 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 FGFR1OP2Q9NVK5 253 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 GOLGA6L10A0A0M3HER8 536 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 TCRBV7S2A1N4TA0A589 114 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 MSH4O15457 936 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 BMP3P12645 472 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 LRIG3Q6UXM1 1119 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 YTHDF3Q7Z739 585 aaKnown RBP13.41□□□□□ -0.26
HDAC4-208ENST00000463007 NEK9Q8TD19 979 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 SLC20A1Q8WUM9 679 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 SYN2Q92777 582 aaPredicted RBP13.41□□□□□ -0.26
HDAC4-208ENST00000463007 FAM20AQ96MK3 541 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 CTNNAL1Q9UBT7 734 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 PRR12Q9ULL5 1215 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 BRCA1P38398 1863 aaKnown RBP13.41□□□□□ -0.26
HDAC4-208ENST00000463007 PARP14Q460N5 1801 aa13.41□□□□□ -0.26
HDAC4-208ENST00000463007 CCT8L1PA6NM43 557 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 FOSP01100 380 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 ELF3P78545 371 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 GIT2Q14161 759 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 HP1BP3Q5SSJ5 553 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 CAPN12Q6ZSI9 719 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 RPAINQ86UA6 219 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 SYT2Q8N9I0 419 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 NSMCE1Q8WV22 266 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 PWWP2AQ96N64 755 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 ACTR5Q9H9F9 607 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 MCM8Q9UJA3 840 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 DDX39AO00148 427 aaKnown RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 CALCAP01258 141 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 SLC15A2Q16348 729 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 EDRF1Q3B7T1 1238 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 PREPLQ4J6C6 727 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 NUGGCQ68CJ6 796 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 JAMLQ86YT9 394 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 CCT6BQ92526 530 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 HOOK2Q96ED9 719 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 CAMKK2Q96RR4 588 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 CSRNP1Q96S65 589 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 FAM167BQ9BTA0 163 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 DDX23Q9BUQ8 820 aaKnown RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 TMX2Q9Y320 296 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 TISP43B9A030 160 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 UBOX5O94941 541 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 VIL1P09327 827 aaKnown RBP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 ECE1P42892 770 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 RBM5P52756 815 aaKnown RBP eCLIP13.4□□□□□ -0.26
HDAC4-208ENST00000463007 BMT2Q1RMZ1 405 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 FAM186BQ8IYM0 893 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 SLC35C1Q96A29 364 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 PLCD4Q9BRC7 762 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 FAM114A2Q9NRY5 505 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 AGAP1Q9UPQ3 857 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 TRAF3IP3Q9Y228 551 aa13.4□□□□□ -0.26
HDAC4-208ENST00000463007 TCP11X1B4DZS4 312 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 ANKRD63C9JTQ0 380 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 CCDC188H7C350 402 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 GJC1P36383 396 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 C2CD6Q53TS8 623 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 SYCP3Q8IZU3 236 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 SLC17A8Q8NDX2 589 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 ZBED3Q96IU2 234 aaPredicted RBP13.39□□□□□ -0.27
HDAC4-208ENST00000463007 ERP44Q9BS26 406 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 RAB17Q9H0T7 212 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 DEFB129Q9H1M3 183 aa13.39□□□□□ -0.27
HDAC4-208ENST00000463007 RANBP17Q9H2T7 1088 aaKnown RBP13.39□□□□□ -0.27
HDAC4-208ENST00000463007 PLA2G6O60733 806 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms