RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ELAC1Q9H777 363 aaKnown RBP25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 PARVGQ9HBI0 331 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 KCNH3Q9ULD8 1083 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 CNTNAP2Q9UHC6 1331 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 RALGAPA2Q2PPJ7 1873 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 MYMKA6NI61 221 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 K7ERI5 159 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 SLC16A4O15374 487 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 ARF4P18085 180 aaPredicted RBP25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 CMA1P23946 247 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 FAM189BP81408 668 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 PRPF4BQ13523 1007 aaKnown RBP25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 FAM187BQ17R55 369 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 CRIPAKQ8N1N5 446 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 DEFB123Q8N688 67 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 MYCT1Q8N699 235 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 SPIRE2Q8WWL2 714 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 DDX12PQ92771 950 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 CCDC51Q96ER9 411 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 TRAIPQ9BWF2 469 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 TTYH1Q9H313 450 aaPredicted RBP25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 FAM105AQ9NUU6 356 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 KIAA1671Q9BY89 1806 aa25.18■■□□□ 1.62
CCDC28B-203ENST00000461819 PFKFB1P16118 471 aa25.17■■□□□ 1.62
CCDC28B-203ENST00000461819 PAN2Q504Q3 1202 aaKnown RBP25.17■■□□□ 1.62
CCDC28B-203ENST00000461819 LRRC27Q9C0I9 530 aa25.17■■□□□ 1.62
CCDC28B-203ENST00000461819 TNMDQ9H2S6 317 aa25.17■■□□□ 1.62
CCDC28B-203ENST00000461819 ARHGAP28Q9P2N2 729 aa25.17■■□□□ 1.62
CCDC28B-203ENST00000461819 A0A1B0GVL5 298 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 ACKR2O00590 384 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 HOXA2O43364 376 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 EOMESO95936 686 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 FGFR1P11362 822 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 GATMP50440 423 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 ZNF131P52739 623 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 TAP1Q03518 808 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 BTG3Q14201 252 aaPredicted RBP25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 ABI1Q8IZP0 508 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 FIBCD1Q8N539 461 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 SP7Q8TDD2 431 aaPredicted RBP25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 STAMQ92783 540 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 TRIM6Q9C030 488 aaPredicted RBP25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 MAGEF1Q9HAY2 307 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 RC3H2Q9HBD1 1191 aaKnown RBP25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 PCDHB2Q9Y5E7 798 aa25.16■■□□□ 1.62
CCDC28B-203ENST00000461819 LINC01553A4QN01 128 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 GOLGA6L4A6NEF3 574 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 H0YCG3 227 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 ARHGEF15O94989 841 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 AMPD3Q01432 767 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 STRN3Q13033 797 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 UBXN11Q5T124 520 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 SLC27A1Q6PCB7 646 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 CMTR2Q8IYT2 770 aaKnown RBP25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 CEP57L1Q8IYX8 460 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 ZNF689Q96CS4 500 aaPredicted RBP25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 NTPCRQ9BSD7 190 aaKnown RBP25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 SEMA6BQ9H3T3 888 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 TMEM134Q9H6X4 195 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 CHD9Q3L8U1 2897 aa25.15■■□□□ 1.62
CCDC28B-203ENST00000461819 A0A1W2PQ27 194 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 A0A1W2PQ64 194 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 A0A1W2PQD8 194 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 TBKBP1A7MCY6 615 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 K7ENM7 598 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 N4BP3O15049 544 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 IDEP14735 1019 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 ATF7P17544 494 aaPredicted RBP25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 LONRF3Q496Y0 759 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 ZNF598Q86UK7 904 aaKnown RBP25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 CDR2LQ86X02 465 aaPredicted RBP25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 FAM178BQ8IXR5 827 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 FSIP1Q8NA03 581 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 TMEM161BQ8NDZ6 487 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 MRPS27Q92552 414 aaKnown RBP25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 PGBD4Q96DM1 585 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 EIF2AQ9BY44 585 aaKnown RBP25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 CERS4Q9HA82 394 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 KBTBD4Q9NVX7 518 aa25.14■■□□□ 1.62
CCDC28B-203ENST00000461819 A0A1B0GUA9 196 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 TTLL13PA6NNM8 815 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 TRAK2O60296 914 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 NPTXRO95502 500 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 EDN1P05305 212 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 NCKAP1LP55160 1127 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 CNNM3Q8NE01 707 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 LPPQ93052 612 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 DNAJC19Q96DA6 116 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 IPO9Q96P70 1041 aaKnown RBP25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 TGS1Q96RS0 853 aaKnown RBP25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 ADPGKQ9BRR6 497 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 MRPL4Q9BYD3 311 aaKnown RBP25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 PDZD7Q9H5P4 517 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 MTUS1Q9ULD2 1270 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 USP20Q9Y2K6 914 aa25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 COL4A4P53420 1690 aaPredicted RBP25.13■■□□□ 1.61
CCDC28B-203ENST00000461819 MYO9BQ13459 2157 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 ZNF623O75123 536 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 MAPTP10636 758 aaKnown RBP25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 GAP43P17677 238 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms