RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 SASS6Q6UVJ0 657 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 PPP4R3CPQ6ZMV5 832 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 EPM2AIP1Q7L775 607 aaPredicted RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 DEFB128Q7Z7B8 93 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 MAP4K3Q8IVH8 894 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 NELFCDQ8IXH7 590 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 MYOCDQ8IZQ8 938 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 TMEM199Q8N511 208 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 PRIMPOLQ96LW4 560 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 ACCSQ96QU6 501 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 MRPL4Q9BYD3 311 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 IFIH1Q9BYX4 1025 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 GTPBP4Q9BZE4 634 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 FZD8Q9H461 694 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 AGO3Q9H9G7 860 aaKnown RBP11.18□□□□□ -0.62
UPF2-204ENST00000460569 PADI3Q9ULW8 664 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 MAPK8IP1Q9UQF2 711 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 NR2E3Q9Y5X4 410 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 TET1Q8NFU7 2136 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 MICAL3Q7RTP6 2002 aa11.18□□□□□ -0.62
UPF2-204ENST00000460569 ZMYM2Q9UBW7 1377 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 CNTNAP2Q9UHC6 1331 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 SYCE3A1L190 88 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 ACKR2O00590 384 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 HNRNPDLO14979 420 aaKnown RBP11.17□□□□□ -0.62
UPF2-204ENST00000460569 GPR182O15218 404 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 TSPAN1O60635 241 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 LETM1O95202 739 aaPredicted RBP11.17□□□□□ -0.62
UPF2-204ENST00000460569 KIF20AO95235 890 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 EDN1P05305 212 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 CSF2RAP15509 400 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 BMP6P22004 513 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 LIG4P49917 911 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 KCNA1Q09470 495 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 PRPF4BQ13523 1007 aaKnown RBP11.17□□□□□ -0.62
UPF2-204ENST00000460569 STIM1Q13586 685 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 PCBP1Q15365 356 aaKnown RBP eCLIP11.17□□□□□ -0.62
UPF2-204ENST00000460569 AMHR2Q16671 573 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 FAM187BQ17R55 369 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 SYCP3Q8IZU3 236 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 GUF1Q8N442 669 aaKnown RBP11.17□□□□□ -0.62
UPF2-204ENST00000460569 ZNF507Q8TCN5 953 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 SCFD1Q8WVM8 642 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 BADQ92934 168 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 KCNN1Q92952 543 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 CPB2Q96IY4 423 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 TARS2Q9BW92 718 aaKnown RBP11.17□□□□□ -0.62
UPF2-204ENST00000460569 STRA6Q9BX79 667 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 ERVK-5Q9HDB9 667 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 AGPAT5Q9NUQ2 364 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 ST3GAL5Q9UNP4 418 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 EXOC7Q9UPT5 735 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 PIN4Q9Y237 131 aaKnown RBP11.17□□□□□ -0.62
UPF2-204ENST00000460569 USP20Q9Y2K6 914 aa11.17□□□□□ -0.62
UPF2-204ENST00000460569 TTLL13PA6NNM8 815 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 CXCL10P02778 98 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 ARF4P18085 180 aaPredicted RBP11.16□□□□□ -0.62
UPF2-204ENST00000460569 PRCPP42785 496 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 NLRP12P59046 1061 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 FPGSQ05932 587 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 NCBP1Q09161 790 aaKnown RBP11.16□□□□□ -0.62
UPF2-204ENST00000460569 PPIGQ13427 754 aaKnown RBP eCLIP11.16□□□□□ -0.623e-8■■■■□ 24.6
UPF2-204ENST00000460569 GPNMBQ14956 572 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 STX1AQ16623 288 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 BMT2Q1RMZ1 405 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 DPCR1Q3MIW9 517 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 ZSCAN23Q3MJ62 389 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 PLEKHG4Q58EX7 1191 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 ATF7IP2Q5U623 682 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 KLHL10Q6JEL2 608 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 CDR2LQ86X02 465 aaPredicted RBP11.16□□□□□ -0.62
UPF2-204ENST00000460569 DBF4BQ8NFT6 615 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 SEPT8Q92599 483 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 LBHD1Q9BQE6 289 aaPredicted RBP11.16□□□□□ -0.62
UPF2-204ENST00000460569 GZF1Q9H116 711 aaPredicted RBP11.16□□□□□ -0.62
UPF2-204ENST00000460569 IKZF4Q9H2S9 585 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 TMEM206Q9H813 350 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 ANKFY1Q9P2R3 1169 aa11.16□□□□□ -0.62
UPF2-204ENST00000460569 PSMA7O14818 248 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 N4BP3O15049 544 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 PIGRP01833 764 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 CD44P16070 742 aaKnown RBP11.15□□□□□ -0.62
UPF2-204ENST00000460569 ZSCAN20P17040 1043 aaPredicted RBP11.15□□□□□ -0.62
UPF2-204ENST00000460569 AXLP30530 894 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 HOXD13P35453 343 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 PPP1R2P41236 205 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 MATR3P43243 847 aaKnown RBP eCLIP11.15□□□□□ -0.62
UPF2-204ENST00000460569 TYRO3Q06418 890 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 KNOP1Q1ED39 458 aaKnown RBP11.15□□□□□ -0.62
UPF2-204ENST00000460569 ZNF568Q3ZCX4 644 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 COBLL1Q53SF7 1204 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 EEF1DP3Q658K8 133 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 TWF2Q6IBS0 349 aaKnown RBP11.15□□□□□ -0.62
UPF2-204ENST00000460569 NOTUMQ6P988 496 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 CNKSR3Q6P9H4 555 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 ZPBP2Q6X784 338 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 RPUSD2Q8IZ73 545 aaKnown RBP11.15□□□□□ -0.62
UPF2-204ENST00000460569 ADSSL1Q8N142 457 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 MLKLQ8NB16 471 aa11.15□□□□□ -0.62
UPF2-204ENST00000460569 APBB2Q92870 758 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms