RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 AIFM3Q96NN9 605 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 MTRQ99707 1265 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 LARP6Q9BRS8 491 aaKnown RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 LXNQ9BS40 222 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 TMEM175Q9BSA9 504 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 EMILIN2Q9BXX0 1053 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 IFT122Q9HBG6 1241 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 ANKEF1Q9NU02 776 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 RNF19AQ9NV58 838 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 TPCN1Q9ULQ1 816 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 BARX2Q9UMQ3 279 aaPredicted RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 PCDHB2Q9Y5E7 798 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 MTCL1Q9Y4B5 1905 aaKnown RBP7.89□□□□□ -1.15
VPS41-208ENST00000448833 WDFY4Q6ZS81 3184 aa7.89□□□□□ -1.15
VPS41-208ENST00000448833 C2orf71A6NGG8 1288 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 NEMFO60524 1076 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 ZC3H11AO75152 810 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS41-208ENST00000448833 CSDE1O75534 798 aaKnown RBP7.88□□□□□ -1.15
VPS41-208ENST00000448833 OFD1O75665 1012 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 SLITRK3O94933 977 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 LYPLA2O95372 231 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 C1RP00736 705 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 CTSAP10619 480 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 NCLP19338 710 aaKnown RBP7.88□□□□□ -1.15
VPS41-208ENST00000448833 FGFR4P22455 802 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 CA8P35219 290 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 NEK4P51957 841 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 AK2P54819 239 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 NPEPPSP55786 919 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 ORC2Q13416 577 aaPredicted RBP7.88□□□□□ -1.15
VPS41-208ENST00000448833 DRP2Q13474 957 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 EMC2Q15006 297 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 ATAT1Q5SQI0 421 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 PLA2G4FQ68DD2 849 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 NOTUMQ6P988 496 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 TRIM67Q6ZTA4 783 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 FERMT3Q86UX7 667 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 UBALD2Q8IYN6 164 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 VPS52Q8N1B4 723 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 RNF149Q8NC42 400 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 HAS1Q92839 578 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 GTF3C6Q969F1 213 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 PBXIP1Q96AQ6 731 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 IGSF21Q96ID5 467 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 ZNF668Q96K58 619 aaPredicted RBP7.88□□□□□ -1.15
VPS41-208ENST00000448833 RPGRIP1Q96KN7 1286 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 NFKBIZQ9BYH8 718 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 TRIM6Q9C030 488 aaPredicted RBP7.88□□□□□ -1.15
VPS41-208ENST00000448833 S1PR5Q9H228 398 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 ADAM7Q9H2U9 754 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 TTC12Q9H892 705 aaPredicted RBP7.88□□□□□ -1.15
VPS41-208ENST00000448833 TBC1D13Q9NVG8 400 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 RAPGEFL1Q9UHV5 662 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 MUTYHQ9UIF7 546 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 FAN1Q9Y2M0 1017 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 HCFC2Q9Y5Z7 792 aa7.88□□□□□ -1.15
VPS41-208ENST00000448833 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.87□□□□□ -1.15
VPS41-208ENST00000448833 TMEM150BA6NC51 233 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 TMEM221A6NGB7 291 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 HIDE1A8MVS5 230 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 M0R296 226 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 MAP3K13O43283 966 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 CLASP2O75122 1294 aaKnown RBP7.87□□□□□ -1.15
VPS41-208ENST00000448833 GALTP07902 379 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 ITGA4P13612 1032 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 PTENP60484 403 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 ZXDAP98168 799 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 SIGLEC14Q08ET2 396 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 LLGL2Q6P1M3 1020 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 CYP26C1Q6V0L0 522 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 ZBTB33Q86T24 672 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 KSR1Q8IVT5 923 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 MCPH1Q8NEM0 835 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 ERMNQ8TAM6 284 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 TMEM143Q96AN5 459 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 ACSF2Q96CM8 615 aaPredicted RBP7.87□□□□□ -1.15
VPS41-208ENST00000448833 KIF12Q96FN5 646 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 DYDC2Q96IM9 177 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 HSD17B14Q9BPX1 270 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 EIF2AK1Q9BQI3 630 aaKnown RBP7.87□□□□□ -1.15
VPS41-208ENST00000448833 SH2D3AQ9BRG2 576 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 LLPHQ9BRT6 129 aaKnown RBP7.87□□□□□ -1.15
VPS41-208ENST00000448833 ZBP1Q9H171 429 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 NRDE2Q9H7Z3 1164 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 RSAD1Q9HA92 442 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 MRPL17Q9NRX2 175 aaKnown RBP7.87□□□□□ -1.15
VPS41-208ENST00000448833 RGL1Q9NZL6 768 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 LIMCH1Q9UPQ0 1083 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 USTQ9Y2C2 406 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 INPP5FQ9Y2H2 1132 aa7.87□□□□□ -1.15
VPS41-208ENST00000448833 ZMYM2Q9UBW7 1377 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 NT5C1B-RDH14C9J2C7 533 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 RBAK-RBAKDNI3L0D1 243 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 INO80B-WBP1J3KQ70 363 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 CTDNEP1O95476 244 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 FDPSP14324 419 aaKnown RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 MUTP22033 750 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 KLRC2P26717 231 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 HOXA11P31270 313 aaPredicted RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 PBX3P40426 434 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms