RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CHMP2AO43633 222 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 ABCB4P21439 1286 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 RFX1P22670 979 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 CYP2J2P51589 502 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 DHX9Q08211 1270 aaKnown RBP17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 C6orf89Q6UWU4 347 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 SLC9A9Q8IVB4 645 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 FAM178BQ8IXR5 827 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 SPICE1Q8N0Z3 855 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 CYFIP2Q96F07 1278 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 NAP1L3Q99457 506 aaPredicted RBP17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 ANKRD62A6NC57 917 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 TRAPPC3O43617 180 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 HADHBP55084 474 aaKnown RBP17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 PRAMEF18Q5VWM3 479 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 FBXW10Q5XX13 1052 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 DUPD1Q68J44 220 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 KCNV1Q6PIU1 500 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 FMO2Q99518 471 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 STRA6Q9BX79 667 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 THAP2Q9H0W7 228 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 PPANQ9NQ55 473 aaKnown RBP17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 TAS2R14Q9NYV8 317 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 GGA3Q9NZ52 723 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 CNOT8Q9UFF9 292 aaKnown RBP17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 CAPN7Q9Y6W3 813 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 SMCHD1A6NHR9 2005 aa17.73■□□□□ 0.43
CLCNKA-203ENST00000439316 GMNCA6NCL1 334 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 FAM187AA6NFU0 413 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 ASNSP08243 561 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 TNFAIP3P21580 790 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 BFSP1Q12934 665 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 TRAF1Q13077 416 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 CLUL1Q15846 466 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 PALB2Q86YC2 1186 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 APOBEC3FQ8IUX4 373 aaKnown RBP17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 LMO3Q8TAP4 145 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 NACC1Q96RE7 527 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 ZDHHC18Q9NUE0 388 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 WRAP73Q9P2S5 460 aaPredicted RBP17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 COG5Q9UP83 839 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 TMX2Q9Y320 296 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 LOXHD1Q8IVV2 1947 aa17.72■□□□□ 0.43
CLCNKA-203ENST00000439316 GOLGA6L10A0A0M3HER8 536 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 GAS7O60861 476 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 HNRNPH1P31943 449 aaKnown RBP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 EIF3BP55884 814 aaKnown RBP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 DR1Q01658 176 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 MYBPC2Q14324 1141 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 KCTD19Q17RG1 926 aaPredicted RBP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 ODR4Q5SWX8 454 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 TLCD1Q96CP7 247 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 ERVK-5Q9HDB9 667 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 NOVA2Q9UNW9 492 aaKnown RBP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 C5orf60A6NFR6 353 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 GUCY2CP25092 1073 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 STAT2P52630 851 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 DHX34Q14147 1143 aaKnown RBP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 TCEAL1Q15170 157 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 KRT71Q3SY84 523 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 KIAA1755Q5JYT7 1200 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 PHLDB3Q6NSJ2 640 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 C11orf63Q6NUN7 778 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 RHOT2Q8IXI1 618 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 ALG3Q92685 438 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 AGPAT1Q99943 283 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 ERP44Q9BS26 406 aa17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 GLIS2Q9BZE0 524 aaPredicted RBP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 BCCIPQ9P287 314 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLCNKA-203ENST00000439316 DCDC2CA8MYV0 355 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 CFBP00751 764 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 POLR2MP0CAP2 368 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 VCAM1P19320 739 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 TMOD1P28289 359 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 MAGOHP61326 146 aaKnown RBP17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 MAPK7Q13164 816 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 DRP2Q13474 957 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 PRPF4BQ13523 1007 aaKnown RBP17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 ARHGAP44Q17R89 818 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 B3GNT9Q6UX72 402 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 BANK1Q8NDB2 785 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 MAGOHBQ96A72 148 aaKnown RBP17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 WDR11Q9BZH6 1224 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 EPB41L4BQ9H329 900 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 UNC45AQ9H3U1 944 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 LRRC4CQ9HCJ2 640 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 MYH11P35749 1972 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 FOXN3O00409 490 aaPredicted RBP17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 EXOC3O60645 756 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 PLCB4Q15147 1175 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 ZYXQ15942 572 aaKnown RBP17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 GPR162Q16538 588 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 CEP55Q53EZ4 464 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 ODF2Q5BJF6 829 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 TRIM31Q9BZY9 425 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 VCPKMTQ9H867 229 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 GOPCQ9HD26 462 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 ATP8A1Q9Y2Q0 1164 aa17.7■□□□□ 0.42
CLCNKA-203ENST00000439316 PFASO15067 1338 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms