RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 GPRC5CQ9NQ84 441 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 KCND2Q9NZV8 630 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 APEX2Q9UBZ4 518 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 LRFN2Q9ULH4 789 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 TFR2Q9UP52 801 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 SLC16A3O15427 465 aaKnown RBP13.17□□□□□ -0.3
TCOF1-205ENST00000439160 SAT1P21673 171 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 TM4SF1P30408 202 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 SLC18A3Q16572 532 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 WDR72Q3MJ13 1102 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 GMCL1P1Q8NEA9 526 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 TBK1Q9UHD2 729 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 I3L4J1 428 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 GNAT1P11488 350 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 TBXAS1P24557 533 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-205ENST00000439160 ZNF131P52739 623 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 KCNV1Q6PIU1 500 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 PNMA8AQ86V59 439 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-205ENST00000439160 IDI2Q9BXS1 227 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 MAGED2Q9UNF1 606 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-205ENST00000439160 EVI5O60447 810 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 SPDYE2Q495Y8 402 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 IFT122Q9HBG6 1241 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 PCSK1NQ9UHG2 260 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 MRFAP1Q9Y605 127 aa13.17□□□□□ -0.3
TCOF1-205ENST00000439160 MAFGO15525 162 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 PPP1R9AQ9ULJ8 1098 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 UBE4BO95155 1302 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 FMN2Q9NZ56 1722 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 CCL15-CCL14A0A0B4J2E2 113 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 ZNF185O15231 689 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 DDNO94850 711 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-205ENST00000439160 CCL15Q16663 113 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 KIAA1841Q6NSI8 718 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 FAM83AQ86UY5 434 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 RFFLQ8WZ73 363 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 AGPAT1Q99943 283 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 TIPINQ9BVW5 301 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.16□□□□□ -0.3
TCOF1-205ENST00000439160 MKRN1Q9UHC7 482 aaKnown RBP13.16□□□□□ -0.3
TCOF1-205ENST00000439160 DISP2A7MBM2 1401 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 PSMC4P43686 418 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 SLC30A5Q8TAD4 765 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 STK33Q9BYT3 514 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 GCOM2Q9BZD3 368 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-205ENST00000439160 A0A087X0B3 334 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 BBS9Q3SYG4 887 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 ANKRD20A3Q5VUR7 823 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 CDR2LQ86X02 465 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-205ENST00000439160 CHST13Q8NET6 341 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 OR6J1Q8NGC5 347 aa13.16□□□□□ -0.3
TCOF1-205ENST00000439160 TARS2Q9BW92 718 aaKnown RBP13.16□□□□□ -0.3
TCOF1-205ENST00000439160 SYNGAP1Q96PV0 1343 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 MRC1P22897 1456 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 HUS1O60921 280 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 ACSL3O95573 720 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 RFX1P22670 979 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 ACTR2P61160 394 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 TMEM62Q0P6H9 643 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 TTI2Q6NXR4 508 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 CC2D1AQ6P1N0 951 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-205ENST00000439160 EMBQ6PCB8 327 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 WHAMMQ8TF30 809 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 KIF12Q96FN5 646 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 SMARCAD1Q9H4L7 1026 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 INTS9Q9NV88 658 aaKnown RBP13.15□□□□□ -0.3
TCOF1-205ENST00000439160 GAKO14976 1311 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 SSU72P8A0A1W2PR75 194 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 M0QYV0 167 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 CYP2B6P20813 491 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 KCNJ6P48051 423 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 GALCP54803 685 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 PSMC6P62333 389 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 NNTQ13423 1086 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 NCAPHQ15003 741 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 MAP7D1Q3KQU3 841 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 C9orf131Q5VYM1 1079 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 ANKS1AQ92625 1134 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 FAM198AQ9UFP1 575 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 FZD1Q9UP38 647 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 INHBAP08476 426 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 PSMC1P62191 440 aaKnown RBP13.15□□□□□ -0.3
TCOF1-205ENST00000439160 GJB7Q6PEY0 223 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 MOXD1Q6UVY6 613 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 CACNA2D3Q8IZS8 1091 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 BEST2Q8NFU1 509 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 NUDT12Q9BQG2 462 aa13.15□□□□□ -0.3
TCOF1-205ENST00000439160 PEAK1Q9H792 1746 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SLIT3O75094 1523 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 PFASO15067 1338 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 CRCPO75575 148 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 ZNF157P51786 506 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 HNRNPH2P55795 449 aaKnown RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 AGPAT3Q9NRZ7 376 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SLC26A4O43511 780 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 SLC25A27O95847 323 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 PGK2P07205 417 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 PLEKP08567 350 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-205ENST00000439160 HUNKP57058 714 aa13.14□□□□□ -0.31
TCOF1-205ENST00000439160 GKAP1Q5VSY0 366 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms