RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF746Q6NUN9 644 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-208ENST00000437607 TMEM184AQ6ZMB5 413 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 TRMT1LQ7Z2T5 733 aaKnown RBP13.5□□□□□ -0.25
PTPRF-208ENST00000437607 THNSL1Q8IYQ7 743 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 IGSF22Q8N9C0 903 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 MICAL1Q8TDZ2 1067 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 SNX29Q8TEQ0 813 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 GJA10Q969M2 543 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 CCDC34Q96HJ3 373 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 CDK5RAP3Q96JB5 506 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 RPGRIP1Q96KN7 1286 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 CASD1Q96PB1 797 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 RIT2Q99578 217 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 CDCA3Q99618 268 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-208ENST00000437607 S1PR5Q9H228 398 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 ELAC1Q9H777 363 aaKnown RBP13.5□□□□□ -0.25
PTPRF-208ENST00000437607 AAASQ9NRG9 546 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 TBC1D22BQ9NU19 505 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 STK24Q9Y6E0 443 aa13.5□□□□□ -0.25
PTPRF-208ENST00000437607 TDRD15B5MCY1 1934 aaKnown RBP13.49□□□□□ -0.25
PTPRF-208ENST00000437607 MTCL1Q9Y4B5 1905 aaKnown RBP13.49□□□□□ -0.25
PTPRF-208ENST00000437607 HIDE1A8MVS5 230 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 PSMD10O75832 226 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 ATF7P17544 494 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-208ENST00000437607 PBX3P40426 434 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 NDUFA8P51970 172 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 PLCB3Q01970 1234 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 PPP2R5CQ13362 524 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 IL17AQ16552 155 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 ODR4Q5SWX8 454 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 PLPP4Q5VZY2 271 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 CAVIN1Q6NZI2 390 aaKnown RBP13.49□□□□□ -0.25
PTPRF-208ENST00000437607 SYCE2Q6PIF2 218 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 CABP7Q86V35 215 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 CKAP2LQ8IYA6 745 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 METTL13Q8N6R0 699 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 PBXIP1Q96AQ6 731 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 ASIC4Q96FT7 647 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 CALML4Q96GE6 196 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 ADAMTS10Q9H324 1103 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 ATP6V0A4Q9HBG4 840 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 DACT1Q9NYF0 836 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 GABBR1Q9UBS5 961 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 CCDC39Q9UFE4 941 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 VAV3Q9UKW4 847 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 KCNH3Q9ULD8 1083 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 LZTS1Q9Y250 596 aa13.49□□□□□ -0.25
PTPRF-208ENST00000437607 FAM237AA0A1B0GTK4 181 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 PP2D1A8MPX8 630 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 SLC26A4O43511 780 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 ZNF862O60290 1169 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 LAG3P18627 525 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 NLRP11P59045 1033 aaKnown RBP13.48□□□□□ -0.25
PTPRF-208ENST00000437607 TCF15Q12870 199 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 PDIA5Q14554 519 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 ZRSR1Q15695 479 aaKnown RBP13.48□□□□□ -0.25
PTPRF-208ENST00000437607 CLLU1OSQ5K130 101 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 CCDC183Q5T5S1 534 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 PDE12Q6L8Q7 609 aaKnown RBP13.48□□□□□ -0.25
PTPRF-208ENST00000437607 ANKRD54Q6NXT1 300 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 KCNT2Q6UVM3 1135 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 SMAP1Q8IYB5 467 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-208ENST00000437607 LRRC71Q8N4P6 559 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 PDILTQ8N807 584 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 EPSTI1Q96J88 318 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 CCSER1Q9C0I3 900 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 TMEM117Q9H0C3 514 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 NUP62CLQ9H1M0 184 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 DISC1Q9NRI5 854 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 RNF216Q9NWF9 866 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-208ENST00000437607 CDH22Q9UJ99 828 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 HPSEQ9Y251 543 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 PCDHA10Q9Y5I2 948 aa13.48□□□□□ -0.25
PTPRF-208ENST00000437607 ZFHX2Q9C0A1 2572 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-208ENST00000437607 SPTBN4Q9H254 2564 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 WDR64B1ANS9 1081 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 NR1I2O75469 434 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 PSAPP07602 524 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 CCT6AP40227 531 aaKnown RBP13.47□□□□□ -0.25
PTPRF-208ENST00000437607 STAT6P42226 847 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 JAK3P52333 1124 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 SPIRE1Q08AE8 756 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 SIGLEC14Q08ET2 396 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 KARSQ15046 597 aaKnown RBP13.47□□□□□ -0.25
PTPRF-208ENST00000437607 UGCGQ16739 394 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 EFCAB12Q6NXP0 572 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 LLGL2Q6P1M3 1020 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 USP49Q70CQ1 688 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 MIER3Q7Z3K6 550 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 ZNF598Q86UK7 904 aaKnown RBP13.47□□□□□ -0.25
PTPRF-208ENST00000437607 ECHDC2Q86YB7 292 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 CEP57L1Q8IYX8 460 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 FBXL6Q8N531 539 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 DHX58Q96C10 678 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 ZNF668Q96K58 619 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-208ENST00000437607 TCF25Q9BQ70 676 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 APOL5Q9BWW9 433 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 UNC45AQ9H3U1 944 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 USP25Q9UHP3 1055 aa13.47□□□□□ -0.25
PTPRF-208ENST00000437607 FSD2A1L4K1 749 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms