RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 KIAA1841Q6NSI8 718 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 USP45Q70EL2 814 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 KANSL1Q7Z3B3 1105 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 LILRA2Q8N149 483 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 ENAHQ8N8S7 591 aaPredicted RBP5.06□□□□□ -1.6
HMGB3-203ENST00000430118 TGFBRAP1Q8WUH2 860 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 ASB15Q8WXK1 588 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 FERMT2Q96AC1 680 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 FOXRED1Q96CU9 486 aaPredicted RBP5.06□□□□□ -1.6
HMGB3-203ENST00000430118 PEX11GQ96HA9 241 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 LRGUKQ96M69 825 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 ARPC5LQ9BPX5 153 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 SELENOOQ9BVL4 669 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 GTPBP4Q9BZE4 634 aaKnown RBP5.06□□□□□ -1.6
HMGB3-203ENST00000430118 MS4A5Q9H3V2 200 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 CARS2Q9HA77 564 aaKnown RBP5.06□□□□□ -1.6
HMGB3-203ENST00000430118 TPSG1Q9NRR2 321 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 DDX20Q9UHI6 824 aaKnown RBP5.06□□□□□ -1.6
HMGB3-203ENST00000430118 WASF3Q9UPY6 502 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 TELO2Q9Y4R8 837 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 NRXN1Q9ULB1 1477 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 KNDC1Q76NI1 1749 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 TECPR2O15040 1411 aa5.06□□□□□ -1.6
HMGB3-203ENST00000430118 MYOM1P52179 1685 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 GPRASP1Q5JY77 1395 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 CLTCL1P53675 1640 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 TCRBV5S2A0A599 114 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 PRAMEF25A6NGN4 478 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 RASSF10A6NK89 507 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 APAF1O14727 1248 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 TPP1O14773 563 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 MAFO75444 373 aaPredicted RBP5.05□□□□□ -1.6
HMGB3-203ENST00000430118 PRLP01236 227 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 ARL4AP40617 200 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 NEK3P51956 506 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 AK2P54819 239 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 ROM1Q03395 351 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 SPIDRQ14159 915 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 SLC9A5Q14940 896 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 GRAMD1BQ3KR37 738 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 PITRM1Q5JRX3 1037 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 MORC1Q86VD1 984 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 DENND1CQ8IV53 801 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 NUP43Q8NFH3 380 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 COA7Q96BR5 231 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 MVB12AQ96EY5 273 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 TNIP3Q96KP6 325 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 GBP4Q96PP9 640 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 QRSL1Q9H0R6 528 aaKnown RBP5.05□□□□□ -1.6
HMGB3-203ENST00000430118 NLRC4Q9NPP4 1024 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 EBF1Q9UH73 591 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 TAGLN3Q9UI15 199 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 PHTF1Q9UMS5 762 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 DNM3Q9UQ16 869 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 OVOS2A0A0G2JMS6 1433 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 OVOS2A0A0J9YW53 1432 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 OVOS2Q6IE36 1432 aa5.05□□□□□ -1.6
HMGB3-203ENST00000430118 IFT172Q9UG01 1749 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 HMGB1P1B2RPK0 211 aaPredicted RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PMM2O15305 246 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 TUSC2O75896 110 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PRPF6O94906 941 aaKnown RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PRNPP04156 253 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PFKMP08237 780 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 TMEM253P0C7T8 217 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 FAHP16930 419 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PRKCAP17252 672 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PDCP20941 246 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CACNB3P54284 484 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 BCAR1P56945 870 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CYP4F8P98187 520 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 ALDH6A1Q02252 535 aaKnown RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 GPR162Q16538 588 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PAN2Q504Q3 1202 aaKnown RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CT83Q5H943 113 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 INTS5Q6P9B9 1019 aaKnown RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CCDC62Q6P9F0 684 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CILP2Q8IUL8 1156 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 OR14C36Q8NHC7 312 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CALML6Q8TD86 181 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 PPM1EQ8WY54 764 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 EAF2Q96CJ1 260 aaPredicted RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 ACO2Q99798 780 aaKnown RBP5.04□□□□□ -1.6
HMGB3-203ENST00000430118 IFT122Q9HBG6 1241 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 SLAMF8Q9P0V8 285 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 FBLN5Q9UBX5 448 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 TUBD1Q9UJT1 453 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 DENND2AQ9ULE3 1009 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 ANKARQ7Z5J8 1434 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 CASZ1Q86V15 1759 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 MAP3K5Q99683 1374 aa5.04□□□□□ -1.6
HMGB3-203ENST00000430118 SPATA31A1Q5TZJ5 1347 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 CEP350Q5VT06 3117 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 PRSS38A1L453 326 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 ACOT7O00154 380 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 ELL2O00472 640 aaPredicted RBP5.03□□□□□ -1.6
HMGB3-203ENST00000430118 SGSM2O43147 1006 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 CYBBP04839 570 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 MMEP08473 750 aa5.03□□□□□ -1.6
HMGB3-203ENST00000430118 MSL3P1P0C860 447 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms