RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 NCKAP1LP55160 1127 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ACVR2BQ13705 512 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC44A4Q53GD3 710 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 RRAGBQ5VZM2 374 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 NXPE4Q6UWF7 544 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PRPF39Q86UA1 669 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 IQCA1Q86XH1 822 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 RPAP2Q8IXW5 612 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 MDM1Q8TC05 714 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 LMX1AQ8TE12 382 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 VCPIP1Q96JH7 1222 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CDHR1Q96JP9 859 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SPATA33Q96N06 139 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 BHMT2Q9H2M3 363 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 KANSL3Q9P2N6 904 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ANAPC2Q9UJX6 822 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 FZD1Q9UP38 647 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ABCA7Q8IZY2 2146 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ANKRD50Q9ULJ7 1429 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ATP7AQ04656 1500 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 IQGAP2Q13576 1575 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PIPSLA2A3N6 862 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TARSL2A2RTX5 802 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 LRRC72A6NJI9 287 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM227AF5H4B4 570 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TIPRLO75663 272 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CKBP12277 381 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DNA2P51530 1060 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 RAD51Q06609 339 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DDR1Q08345 913 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PAK1Q13153 545 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DBN1Q16643 649 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM259Q4ZIN3 620 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SNAP47Q5SQN1 464 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 HMBOX1Q6NT76 420 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PDXDC2PQ6P474 469 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CASC1Q6TDU7 716 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM180AQ6UWF9 173 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 HOMER1Q86YM7 354 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 MAPKAPK5Q8IW41 473 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ZBTB8OSQ8IWT0 167 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CLYBLQ8N0X4 340 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 VPS52Q8N1B4 723 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 NUP93Q8N1F7 819 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 USP38Q8NB14 1042 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 HDAC7Q8WUI4 952 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM151AQ8WW52 585 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DDB2Q92466 427 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 MED8Q96G25 268 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TPSD1Q9BZJ3 242 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 GPR88Q9GZN0 384 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 OAS3Q9Y6K5 1087 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 MYO7AQ13402 2215 aa3.03□□□□□ -1.93
CCDC88A-205ENST00000426576 ANKARQ7Z5J8 1434 aa3.03□□□□□ -1.93
CCDC88A-205ENST00000426576 MLH3Q9UHC1 1453 aa3.03□□□□□ -1.93
CCDC88A-205ENST00000426576 C9J4A7 227 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ZBTB39O15060 712 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TTI1O43156 1089 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 MBTPS2O43462 519 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 MARK3P27448 753 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 BMPR1AP36894 532 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 NDST1P52848 882 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 OXCT1P55809 520 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FBXW4P57775 412 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 RPS15P62841 145 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FOXM1Q08050 763 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 VAC14Q08AM6 782 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SGCGQ13326 291 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 GRM4Q14833 912 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ASIC2Q16515 512 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 VMACQ2NL98 169 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 FBXO43Q4G163 708 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PKDCCQ504Y2 493 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ADALQ6DHV7 355 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 KCNV1Q6PIU1 500 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 AACSQ86V21 672 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SCN4BQ8IWT1 228 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 SNX21Q969T3 373 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC47Q96A33 483 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 GPRASP2Q96D09 838 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 MAP3K3Q99759 626 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 UPF3AQ9H1J1 476 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ADAM7Q9H2U9 754 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PRDM8Q9NQV8 689 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PDLIM7Q9NR12 457 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 DBF4Q9UBU7 674 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 CLCA2Q9UQC9 943 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ARHGAP23Q9P227 1491 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PREX1Q8TCU6 1659 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 LOC105371045A0A1W2PR82 267 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 H7C4K7 107 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 TNFRSF10BO14763 440 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ATP1A1P05023 1023 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 UQCRFS1P1P0C7P4 283 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 PHKG2P15735 406 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 HOXC9P31274 260 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 ICAM3P32942 547 aa3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 C16orf47Q6ZP98 133 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-205ENST00000426576 VASH1Q7L8A9 365 aaPredicted RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms