RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CTNND2Q9UQB3 1225 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 GDAQ9Y2T3 454 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 HTTP42858 3142 aa11.08□□□□□ -0.64
CD44-207ENST00000425428 ACKR2O00590 384 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 PDXKO00764 312 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 KIAA0391O15091 583 aaKnown RBP11.07□□□□□ -0.64
CD44-207ENST00000425428 CD4P01730 458 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 MYBP10242 640 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 DARSP14868 501 aaKnown RBP11.07□□□□□ -0.64
CD44-207ENST00000425428 RAG1P15918 1043 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 ZNF165P49910 485 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 ZNF445P59923 1031 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 EHHADHQ08426 723 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 NFX1Q12986 1120 aaKnown RBP11.07□□□□□ -0.64
CD44-207ENST00000425428 KYAT1Q16773 422 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 ZC2HC1CQ53FD0 456 aaPredicted RBP11.07□□□□□ -0.64
CD44-207ENST00000425428 USP37Q86T82 979 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 IFNLR1Q8IU57 520 aaPredicted RBP11.07□□□□□ -0.64
CD44-207ENST00000425428 ADSSL1Q8N142 457 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 KIAA0895Q8NCT3 520 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 P2RX5Q93086 422 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 HPS3Q969F9 1004 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 ZNF668Q96K58 619 aaPredicted RBP11.07□□□□□ -0.64
CD44-207ENST00000425428 KIFC3Q9BVG8 833 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 RWDD2AQ9UIY3 292 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 FRMD4BQ9Y2L6 1034 aa11.07□□□□□ -0.64
CD44-207ENST00000425428 N4BP3O15049 544 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 CETN3O15182 167 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 CLDN3O15551 220 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 EVI5O60447 810 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 GPR32O75388 356 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 LDHAP00338 332 aaKnown RBP11.06□□□□□ -0.64
CD44-207ENST00000425428 CCNE1P24864 410 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 RFC2P35250 354 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 MNX1P50219 401 aaPredicted RBP11.06□□□□□ -0.64
CD44-207ENST00000425428 FAM187BQ17R55 369 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 BMT2Q1RMZ1 405 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 LRRC26Q2I0M4 334 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 DPCR1Q3MIW9 517 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 FAM26DQ5JW98 314 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 ZNF618Q5T7W0 954 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 ARMCX5Q6P1M9 558 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 NOTUMQ6P988 496 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 ZPBP2Q6X784 338 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 TSHZ1Q6ZSZ6 1077 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 MAP4K3Q8IVH8 894 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 SMYD4Q8IYR2 804 aaPredicted RBP11.06□□□□□ -0.64
CD44-207ENST00000425428 RPUSD2Q8IZ73 545 aaKnown RBP11.06□□□□□ -0.64
CD44-207ENST00000425428 TMEM199Q8N511 208 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 NOC3LQ8WTT2 800 aaKnown RBP11.06□□□□□ -0.64
CD44-207ENST00000425428 SCFD1Q8WVM8 642 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 POMGNT1Q8WZA1 660 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 DPF3Q92784 378 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 DNAJC25Q9H1X3 360 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 ADAMTS10Q9H324 1103 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 IFT122Q9HBG6 1241 aa11.06□□□□□ -0.64
CD44-207ENST00000425428 TULP1O00294 542 aaPredicted RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 SKIP12755 728 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 CDK11BP21127 795 aaKnown RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 FKBP3Q00688 224 aaKnown RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 MBTD1Q05BQ5 628 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 RBL2Q08999 1139 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 FAAP100Q0VG06 881 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 HIC1Q14526 733 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 ATF7IP2Q5U623 682 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 EPM2AIP1Q7L775 607 aaPredicted RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 CREBRFQ8IUR6 639 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 APBB2Q92870 758 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 KCNN1Q92952 543 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 CCDC51Q96ER9 411 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 BPIFA3Q9BQP9 254 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 FTHL17Q9BXU8 183 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 PPP1R12CQ9BZL4 782 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 KIAA1586Q9HCI6 787 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 CHST12Q9NRB3 414 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 PIN4Q9Y237 131 aaKnown RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 TOM1L1O75674 476 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 GNA14O95837 355 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 MYL5Q02045 173 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 MYBPC2Q14324 1141 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 EDRF1Q3B7T1 1238 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 DCAF4L1Q3SXM0 396 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 TWF2Q6IBS0 349 aaKnown RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 FOXR2Q6PJQ5 311 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 CSGALNACT2Q8N6G5 542 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 FAM200AQ8TCP9 573 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 SEPT8Q92599 483 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 LBHD1Q9BQE6 289 aaPredicted RBP11.05□□□□□ -0.64
CD44-207ENST00000425428 FZD8Q9H461 694 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 ANKFY1Q9P2R3 1169 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 NR2E3Q9Y5X4 410 aa11.05□□□□□ -0.64
CD44-207ENST00000425428 PPP1R3GB7ZBB8 358 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 EXOC3O60645 756 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 PPP1R37O75864 691 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 CHRNA1P02708 482 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 GHRP10912 638 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 EPB41P11171 864 aaKnown RBP11.04□□□□□ -0.64
CD44-207ENST00000425428 ACTN1P12814 892 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 GARTP22102 1010 aa11.04□□□□□ -0.64
CD44-207ENST00000425428 CASP5P51878 434 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms