RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TMA7Q9Y2S6 64 aaKnown RBP10.53□□□□□ -0.72
USP54-205ENST00000424265 CHMP2AO43633 222 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 PSAPP07602 524 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 KRT13P13646 458 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 PTPRAP18433 802 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 NACC1Q96RE7 527 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 SYNCQ9H7C4 482 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.53□□□□□ -0.72
USP54-205ENST00000424265 PCDHA7Q9UN72 937 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 HNRNPRO43390 633 aaKnown RBP10.52□□□□□ -0.72
USP54-205ENST00000424265 GTPBP6O43824 516 aaPredicted RBP10.52□□□□□ -0.72
USP54-205ENST00000424265 WDR93Q6P2C0 686 aa10.52□□□□□ -0.72
USP54-205ENST00000424265 GLIS2Q9BZE0 524 aaPredicted RBP10.52□□□□□ -0.72
USP54-205ENST00000424265 JADE2Q9NQC1 790 aa10.52□□□□□ -0.72
USP54-205ENST00000424265 IL17RBQ9NRM6 502 aa10.52□□□□□ -0.72
USP54-205ENST00000424265 NR5A1Q13285 461 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 SLC35F6Q8N357 371 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 VTI1AQ96AJ9 217 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 CATSPER2Q96P56 530 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 INTUQ9ULD6 942 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 UBE2Q2LH0YL09 131 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 PFKFB1P16118 471 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 GSTT1P30711 240 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 PPARDQ03181 441 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 ITGA7Q13683 1181 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 PDE1CQ14123 709 aaPredicted RBP10.52□□□□□ -0.73
USP54-205ENST00000424265 SESTD1Q86VW0 696 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 ADM5C9JUS6 153 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 GAP43P17677 238 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 MAPK4P31152 587 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 TOGARAM2Q6ZUX3 1019 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 GSPT2Q8IYD1 628 aaKnown RBP10.52□□□□□ -0.73
USP54-205ENST00000424265 GLG1Q92896 1179 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 EPSTI1Q96J88 318 aa10.52□□□□□ -0.73
USP54-205ENST00000424265 C6orf203Q9P0P8 240 aaPredicted RBP10.52□□□□□ -0.73
USP54-205ENST00000424265 DSG3P32926 999 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 MDH1P40925 334 aaKnown RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 TECP42680 631 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 TMEM62Q0P6H9 643 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 UBE2SQ16763 222 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ANKRD20A2Q5SQ80 823 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ZFYVE27Q5T4F4 411 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ANKRD20A1Q5TYW2 823 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ANKRD20A3Q5VUR7 823 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 MFSD14CQ5VZR4 134 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 TTBK2Q6IQ55 1244 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 RUFY4Q6ZNE9 571 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 DAAM2Q86T65 1068 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 KLHL29Q96CT2 875 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 KLRG1Q96E93 195 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 TAF6LQ9Y6J9 622 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 HOXC6P09630 235 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 MYZAPP0CAP1 466 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 PTPREP23469 700 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 RFC5P40937 340 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 MTIF2P46199 727 aaKnown RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 SEC24CP53992 1094 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 USP46P62068 366 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 COG7P83436 770 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 TBL3Q12788 808 aaKnown RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 TTLL4Q14679 1199 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 MAP1SQ66K74 1059 aaPredicted RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 BTNL9Q6UXG8 535 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 NME8Q8N427 588 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ACER1Q8TDN7 264 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 PKD2L1Q9P0L9 805 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 CLIC4Q9Y696 253 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 AKR1B15C9JRZ8 316 aaPredicted RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 CALUO43852 315 aaPredicted RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 MGRN1O60291 552 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 PENKP01210 267 aaPredicted RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 TMOD1P28289 359 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 SKOR1P84550 965 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 SEC16BQ96JE7 1060 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 COL4A3BPQ9Y5P4 624 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 NID2Q14112 1375 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 POTEFA5A3E0 1075 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 M0QZ92 97 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ALCAMQ13740 583 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 RDM1Q8NG50 284 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 IRS2Q9Y4H2 1338 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 PEX14O75381 377 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 EPHB4P54760 987 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 ADKP55263 362 aaKnown RBP10.51□□□□□ -0.73
USP54-205ENST00000424265 STRN3Q13033 797 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 MTMR1Q13613 665 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 SPATA24Q86W54 205 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 RASGRP4Q8TDF6 673 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 AGAP11Q8TF27 550 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 AIFM3Q96NN9 605 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 CCT7Q99832 543 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 AGTPBP1Q9UPW5 1226 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 PCDHB13Q9Y5F0 798 aa10.51□□□□□ -0.73
USP54-205ENST00000424265 SPDYE5A6NIY4 337 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 WDR64B1ANS9 1081 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 POTEIP0CG38 1075 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 POTEJP0CG39 1038 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 GHRP10912 638 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 NFKBIAP25963 317 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 PMS2P54278 862 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms