RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 STRA6Q9BX79 667 aa18.71■□□□□ 0.59
COL7A1-202ENST00000422991 NUP62CLQ9H1M0 184 aa18.71■□□□□ 0.59
COL7A1-202ENST00000422991 PRMT7Q9NVM4 692 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-202ENST00000422991 PCDHA5Q9Y5H7 936 aa18.71■□□□□ 0.59
COL7A1-202ENST00000422991 LAMA3Q16787 3333 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 K7ERI5 159 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 TSPAN1O60635 241 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 ERLIN2O94905 339 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 RHOBTB3O94955 611 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 EDN1P05305 212 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 CASP5P51878 434 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 EPHB4P54760 987 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 GTF2BQ00403 316 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 NFX1Q12986 1120 aaKnown RBP18.7■□□□□ 0.58
COL7A1-202ENST00000422991 CNKSR3Q6P9H4 555 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 C16orf59Q7L2K0 433 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 SMARCE1Q969G3 411 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 CCDC47Q96A33 483 aaKnown RBP18.7■□□□□ 0.58
COL7A1-202ENST00000422991 PRIMPOLQ96LW4 560 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 GSDMAQ96QA5 445 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 TMX1Q9H3N1 280 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 AGPAT5Q9NUQ2 364 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 CNTNAP2Q9UHC6 1331 aa18.7■□□□□ 0.58
COL7A1-202ENST00000422991 B4GALT5O43286 388 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 GCNT3O95395 438 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 MYBP10242 640 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 ACRP10323 421 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 ABCD1P33897 745 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 SARSP49591 514 aaKnown RBP18.69■□□□□ 0.58
COL7A1-202ENST00000422991 PSMD2Q13200 908 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 ALCAMQ13740 583 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 ZC2HC1CQ53FD0 456 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-202ENST00000422991 NT5DC1Q5TFE4 455 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 TDHQ8IZJ6 230 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 GLIS3Q8NEA6 775 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 HVCN1Q96D96 273 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 RMND1Q9NWS8 449 aa18.69■□□□□ 0.58
COL7A1-202ENST00000422991 TTLL13PA6NNM8 815 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 ACKR2O00590 384 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 STRN3Q13033 797 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 DSC3Q14574 896 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 PSRC1Q6PGN9 363 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-202ENST00000422991 FAM43BQ6ZT52 329 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-202ENST00000422991 EPM2AIP1Q7L775 607 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-202ENST00000422991 MAP4K3Q8IVH8 894 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 KIAA0895Q8NCT3 520 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 LINC01599Q8WXQ3 324 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 FTHL17Q9BXU8 183 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 SLC39A2Q9NP94 309 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 TBX20Q9UMR3 447 aa18.68■□□□□ 0.58
COL7A1-202ENST00000422991 PIN4Q9Y237 131 aaKnown RBP18.68■□□□□ 0.58
COL7A1-202ENST00000422991 PTPRSQ13332 1948 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 EIF3DO15371 548 aaKnown RBP eCLIP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 MGEA5O60502 916 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 ARF4P18085 180 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 AXLP30530 894 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 HOXA11P31270 313 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 STK4Q13043 487 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 PRPF4BQ13523 1007 aaKnown RBP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 NFKBIBQ15653 356 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 KLHL40Q2TBA0 621 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 TMEM240Q5SV17 173 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 L1TD1Q5T7N2 865 aaKnown RBP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 STXBP4Q6ZWJ1 553 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 CPB2Q96IY4 423 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 MRPL4Q9BYD3 311 aaKnown RBP18.67■□□□□ 0.58
COL7A1-202ENST00000422991 CHST12Q9NRB3 414 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 KIAA1468Q9P260 1216 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 MAN1B1Q9UKM7 699 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 USP20Q9Y2K6 914 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 PCDHB13Q9Y5F0 798 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 UBE4BO95155 1302 aa18.67■□□□□ 0.58
COL7A1-202ENST00000422991 BAIAP3O94812 1187 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 PIGRP01833 764 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 ACTN1P12814 892 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 KCNA1Q09470 495 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 BMT2Q1RMZ1 405 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 ZNF365Q70YC5 407 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 CCDC51Q96ER9 411 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 TSPYL2Q9H2G4 693 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-202ENST00000422991 SZT2Q5T011 3432 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 ZMYM2Q9UBW7 1377 aa18.66■□□□□ 0.58
COL7A1-202ENST00000422991 ABHD14A-ACY1A0A1B0GW23 586 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 PRPF6O94906 941 aaKnown RBP18.65■□□□□ 0.58
COL7A1-202ENST00000422991 FGBP02675 491 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 NCBP1Q09161 790 aaKnown RBP18.65■□□□□ 0.58
COL7A1-202ENST00000422991 IKBKEQ14164 716 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 CCDC183Q5T5S1 534 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 ATF7IP2Q5U623 682 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 NOTUMQ6P988 496 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 ZPBP2Q6X784 338 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 RBM43Q6ZSC3 357 aaKnown RBP18.65■□□□□ 0.58
COL7A1-202ENST00000422991 ZNF507Q8TCN5 953 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 SCFD1Q8WVM8 642 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 BICD1Q96G01 975 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 ACCSQ96QU6 501 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 ACO2Q99798 780 aaKnown RBP18.65■□□□□ 0.58
COL7A1-202ENST00000422991 ADAM2Q99965 735 aa18.65■□□□□ 0.58
COL7A1-202ENST00000422991 TARS2Q9BW92 718 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms